chr20 : 4,022,679 – 4,023,089
410 bp 107 TFs 1 linked gene
This 410 bp open chromatin element is linked to RNF24 and is bound by 107 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RNF24 7.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:4,017,679 – 4,028,089
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 335 bp overlap
Ahr::Arnt 4 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 236 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 283 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 410 bp overlap
BRD4 1 dataset
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 102 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 146 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 298 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 183 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 214 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 131 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 229 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 410 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 301 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 135 bp overlap
ERF::HOXB13 2 datasets
Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_24h DE_24h-ERFHOXB13_MA1937.2 13 bp overlap
ERF::NHLH1 1 dataset
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
ETV2::DRGX 3 datasets
Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_24h DE_24h-ETV2DRGX_MA1940.2 12 bp overlap
ETV5::DRGX 3 datasets
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_24h DE_24h-ETV5DRGX_MA1944.2 12 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_24h DE_24h-ETV5FOXO1_MA1947.2 10 bp overlap
ETV5::HOXA2 3 datasets
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_24h DE_24h-ETV5HOXA2_MA1948.2 12 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 343 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 391 bp overlap
ChIP WTC11 ENCFF875IGU 200 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 341 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 170 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 410 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 373 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 410 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 410 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 410 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 410 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 410 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Gfi1B 3 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H_bioMerck GSE116344.HDAC2.RH4_Entinostat-6H_bioMerck 170 bp overlap
HNF4A 5 datasets
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Motif DE_24h DE_24h-HNF4A_MA1494.2 14 bp overlap
Motif DE_36h DE_36h-HNF4A_MA1494.2 14 bp overlap
Motif DE_48h DE_48h-HNF4A_MA1494.2 14 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 140 bp overlap
HOXD12::ELK1 2 datasets
Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_24h DE_24h-HOXD12ELK1_MA1958.2 13 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 280 bp overlap
Hic1 4 datasets
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Motif DE_24h DE_24h-Hic1_MA0739.2 8 bp overlap
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 152 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 192 bp overlap
ISL2 3 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_24h DE_24h-ISL2_MA0914.2 6 bp overlap
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 338 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 410 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 410 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 117 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 175 bp overlap
MED1 2 datasets
ChIP SGBS GSE64233.MED1.SGBS 111 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 59 bp overlap
MXI1 4 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 103 bp overlap
NANOG 8 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 402 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 342 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 185 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 410 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 328 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 362 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 190 bp overlap
NR2C2 4 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
NR2F1 4 datasets
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap
Motif DE_36h DE_36h-NR2F1_MA1537.2 13 bp overlap
Motif DE_48h DE_48h-NR2F1_MA1537.2 13 bp overlap
Nkx3-2 2 datasets
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_24h DE_24h-Nkx3-2_MA0122.4 10 bp overlap
Nr2f6 4 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_36h DE_36h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_48h DE_48h-Nr2f6_MA0677.2 13 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 1 dataset
ChIP gastroesophageal sphincter ENCFF070PCA 240 bp overlap
PPARD 4 datasets
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Motif DE_24h DE_24h-PPARD_MA1550.2 14 bp overlap
Motif DE_36h DE_36h-PPARD_MA1550.2 14 bp overlap
Motif DE_48h DE_48h-PPARD_MA1550.2 14 bp overlap
PPARG 5 datasets
ChIP ASC GSE21366.PPARG.ASC 106 bp overlap
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 171 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 221 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 186 bp overlap
ChIP macrophage ERP008801.PPARG.macrophage 219 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 325 bp overlap
Pparg::Rxra 4 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_24h DE_24h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
Prdm5 3 datasets
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
Motif DE_24h DE_24h-Prdm5_MA1999.2 11 bp overlap
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 261 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RUNX3 2 datasets
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Motif DE_24h DE_24h-RUNX3_MA0684.3 8 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 261 bp overlap
RXRB 4 datasets
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
Motif DE_36h DE_36h-RXRB_MA0855.1 14 bp overlap
Motif DE_48h DE_48h-RXRB_MA0855.1 14 bp overlap
RXRG 4 datasets
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Motif DE_36h DE_36h-RXRG_MA0856.1 14 bp overlap
Motif DE_48h DE_48h-RXRG_MA0856.1 14 bp overlap
Rxra 4 datasets
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
Motif DE_36h DE_36h-Rxra_MA0512.2 14 bp overlap
Motif DE_48h DE_48h-Rxra_MA0512.2 14 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SIX2 3 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 410 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 410 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 395 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 410 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 410 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 250 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 191 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 192 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 254 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 184 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 210 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 410 bp overlap
SOX10 4 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 171 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 182 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 290 bp overlap
SOX4 4 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_24h DE_24h-SOX4_MA0867.3 8 bp overlap
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 314 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 170 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 298 bp overlap
SPI1 3 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 230 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 250 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 309 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 199 bp overlap
STAT3 4 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 160 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 222 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 142 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 137 bp overlap
Sox11 4 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif DE_24h DE_24h-Sox11_MA0869.3 8 bp overlap
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Sox17 4 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif DE_24h DE_24h-Sox17_MA0078.3 10 bp overlap
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Sox6 4 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_24h DE_24h-Sox6_MA0515.1 10 bp overlap
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Sox7 4 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif DE_24h DE_24h-Sox7_MA2095.1 10 bp overlap
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Spi1 3 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 306 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 339 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 176 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 361 bp overlap
ChIP WTC11 ENCFF502QUV 238 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 80 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 154 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 387 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif DE_24h DE_24h-ZNF143_MA0088.2 16 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF320 2 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 257 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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