chr1 : 26,012,577 – 26,012,946
369 bp 85 TFs 1 linked gene
This 369 bp open chromatin element is linked to EXTL1 and is bound by 85 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EXTL1 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:26,007,577 – 26,017,946
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
ADNP 1 dataset
ChIP K-562 ENCSR440VKE.ADNP.K-562 124 bp overlap
AFF1 1 dataset
ChIP K562 ENCFF583EEH 243 bp overlap
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 131 bp overlap
AR 1 dataset
ChIP VCaP GSE148358.AR.VCaP 68 bp overlap
ARID1A 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 171 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 306 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 167 bp overlap
ChIP K562 ENCFF938UXQ 121 bp overlap
ATF3 6 datasets
ChIP K-562 ENCSR632DCH.ATF3.K-562 267 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 252 bp overlap
ChIP K562 ENCFF604FPV 220 bp overlap
ChIP K562 ENCFF687QUE 366 bp overlap
ChIP K562 ENCFF687QUE 332 bp overlap
ChIP K562 ENCFF921JQW 203 bp overlap
ATF4 3 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 274 bp overlap
ChIP K562 ENCFF030XBX 194 bp overlap
ChIP K562 ENCFF674KTF 216 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 341 bp overlap
ChIP K562 ENCFF308SKS 129 bp overlap
BRD4 1 dataset
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 181 bp overlap
CEBPA 3 datasets
ChIP HepG2 ENCFF175DFS 183 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 220 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 263 bp overlap
CEBPB 4 datasets
ChIP K-562 ENCSR000EHE.CEBPB.K-562 138 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 188 bp overlap
ChIP K562 ENCFF584CTB 129 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 295 bp overlap
CEBPG 5 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 369 bp overlap
ChIP K-562 ENCSR620VIC.CEBPG.K-562 347 bp overlap
ChIP K562 ENCFF651CMK 237 bp overlap
ChIP K562 ENCFF783ADE 217 bp overlap
ChIP K562 ENCFF956TPS 191 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 369 bp overlap
ChIP K562 ENCFF403WPG 332 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 301 bp overlap
Cebpa 6 datasets
ChIP BLaER1 ENCFF093OYK 260 bp overlap
ChIP BLaER1 ENCFF274GAT 248 bp overlap
ChIP BLaER1 ENCFF335XTP 340 bp overlap
ChIP BLaER1 ENCFF346MCV 137 bp overlap
ChIP BLaER1 ENCFF364PUR 197 bp overlap
ChIP BLaER1 ENCFF896HSY 222 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 281 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 369 bp overlap
ChIP K562 ENCFF688PUB 369 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 253 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 127 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 369 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 106 bp overlap
ESR1 4 datasets
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 88 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 173 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 110 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 100 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 69 bp overlap
FOXA1 25 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 63 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 163 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 133 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 89 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 82 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 90 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 100 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 137 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 62 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 57 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 63 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 76 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 82 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 76 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 123 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 279 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 93 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 188 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 91 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 226 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 51 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 220 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 83 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 98 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 75 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 209 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 150 bp overlap
ChIP K562 ENCFF094CMK 211 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 285 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 140 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 308 bp overlap
ChIP DE DE-GATA4-2 369 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 297 bp overlap
ChIP DE DE-GATA6-2 369 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 298 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 344 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 342 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 281 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 369 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 369 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 324 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 103 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 156 bp overlap
GTF3C2 1 dataset
ChIP K-562 ENCSR000DOD.GTF3C2.K-562 113 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 212 bp overlap
ChIP K562 ENCFF968WBH 369 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 221 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 97 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 117 bp overlap
ChIP K562 ENCFF771OHZ 286 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 132 bp overlap
JUN 2 datasets
ChIP K-562 ENCSR000EFS.JUN.K-562 124 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 93 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 187 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 182 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 215 bp overlap
ChIP K562 ENCFF320EQC 139 bp overlap
MAX 3 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 134 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 130 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 90 bp overlap
MAZ 3 datasets
ChIP K-562 ENCSR163IUV.MAZ.K-562 132 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 117 bp overlap
ChIP K562 ENCFF809XHP 311 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 51 bp overlap
MITF 2 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 144 bp overlap
ChIP K562 ENCFF731XJJ 82 bp overlap
MTA3 3 datasets
ChIP K-562 ENCSR180NCY.MTA3.K-562 314 bp overlap
ChIP K-562 ENCSR914NEI.MTA3.K-562 218 bp overlap
ChIP K562 ENCFF289UFB 297 bp overlap
MYC 2 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 145 bp overlap
ChIP P493-6_0HR GSE125863.MYC.P493-6_0HR 200 bp overlap
NR2C1 1 dataset
ChIP K562 ENCFF568JLK 279 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 369 bp overlap
NR2F1 1 dataset
ChIP K562 ENCFF221HJH 234 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 260 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 344 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 83 bp overlap
PML 1 dataset
ChIP NB4 GSE126720.PML.NB4 126 bp overlap
POU2F1 3 datasets
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 234 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 129 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 171 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 368 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 274 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 369 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 194 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 131 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 290 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 145 bp overlap
ChIP K562 ENCFF506JCB 307 bp overlap
SMARCA5 1 dataset
ChIP K562 ENCFF936KHY 82 bp overlap
SMARCC2 1 dataset
ChIP K-562 ENCSR519WMW.SMARCC2.K-562 280 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 284 bp overlap
ChIP K562 ENCFF690CFF 122 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 277 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 300 bp overlap
TAL1 1 dataset
ChIP K562 ENCFF620GMX 235 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 156 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 102 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 252 bp overlap
TP53 1 dataset
ChIP GM00011 GSE55727.TP53.GM00011 96 bp overlap
TRIM24 2 datasets
ChIP K562 ENCFF616RIL 249 bp overlap
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 195 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 114 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 297 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 344 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 132 bp overlap
ChIP K562 ENCFF875HLX 101 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF521DSV 201 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 269 bp overlap
ZFX 3 datasets
ChIP K-562 ENCSR920ASP.ZFX.K-562 352 bp overlap
ChIP K562 ENCFF169LZT 369 bp overlap
ChIP K562 ENCFF169LZT 369 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 237 bp overlap
ZNF282 1 dataset
ChIP K562 ENCFF657WOV 359 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 328 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 369 bp overlap
ZNF395 2 datasets
ChIP K562 ENCFF464EIT 369 bp overlap
ChIP K562 ENCFF464EIT 369 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 123 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 354 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 356 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 76 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 120 bp overlap
ChIP HepG2 ENCFF233UVH 116 bp overlap
Huangfu Lab · Publications · Resources · Contact