chr13 : 90,238,523 90,238,882
359 bp 116 TFs 0 linked genes
This 359 bp open chromatin element has no linked target genes and is bound by 116 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:90,233,523 – 90,243,882
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
AR 8 datasets
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 169 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 240 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 110 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 236 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 132 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 257 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 110 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 244 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 141 bp overlap
ARRB1 1 dataset
ChIP LNCaP-C4-2 GSE55615.ARRB1.LNCaP-C4-2 130 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCL11A 2 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BRD4 9 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 259 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 244 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 246 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 241 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 160 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 307 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 285 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 205 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 254 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 297 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 148 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 209 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 355 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 314 bp overlap
ChIP BLaER1 ENCFF274GAT 304 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 225 bp overlap
E2F1 2 datasets
ChIP HMEC-1 GSE62425.E2F1.HMEC-1 310 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 136 bp overlap
E2F4 1 dataset
ChIP MCF-7_TAM GSE41561.E2F4.MCF-7_TAM 156 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 117 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 347 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 359 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 359 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 359 bp overlap
ERG 4 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 335 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 146 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 160 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 262 bp overlap
ESR1 3 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 132 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 184 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 177 bp overlap
ETV1 2 datasets
ChIP COLO-800 GSE80443.ETV1.COLO-800 359 bp overlap
ChIP LNCaP GSE47120.ETV1.LNCaP 270 bp overlap
FLI1 2 datasets
ChIP UAE GSE23730.FLI1.UAE 174 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 257 bp overlap
FOXA1 13 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 182 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 241 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 332 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 65 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 82 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 106 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 321 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 89 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 359 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 150 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 142 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 232 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 115 bp overlap
FOXA2 1 dataset
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 198 bp overlap
FOXJ3 1 dataset
ChIP K562 ENCFF605HNH 258 bp overlap
GABPA 2 datasets
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 173 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 255 bp overlap
GATA2 10 datasets
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
ChIP ESF GSE108408.GATA2.ESF 268 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 175 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 175 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 270 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 262 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 359 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 231 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 199 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 280 bp overlap
GATA3 5 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 134 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 148 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 113 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 201 bp overlap
ChIP SK-N-SH ENCFF040SSB 198 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 269 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 255 bp overlap
GATA4 1 dataset
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GATA6 1 dataset
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 322 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 229 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 285 bp overlap
HOXB13 6 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 233 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 267 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 108 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 253 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 175 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 254 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 262 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP BT-549_TNF GSE71976.JUN.BT-549_TNF 86 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 191 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 359 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 129 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 337 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 276 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 278 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 4 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 231 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 227 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 171 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 150 bp overlap
NELFE 1 dataset
ChIP K562 ENCFF356MLA 102 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR3C1 3 datasets
ChIP HCC70 GSE152203.NR3C1.HCC70 273 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 190 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 56 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 307 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 3 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 288 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 289 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 2 datasets
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 161 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RARB 1 dataset
Motif DE_12h DE_12h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_12h DE_12h-RARG_MA1553.2 13 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 183 bp overlap
RBM39 1 dataset
ChIP K-562 GSE120104.RBM39.K-562 151 bp overlap
REST 6 datasets
ChIP GM23338 ENCSR871KYB.REST.GM23338 88 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 96 bp overlap
ChIP H1 ENCFF429RUE 226 bp overlap
ChIP PFSK-1 ENCFF845VHA 276 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 235 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 170 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
RUNX1 3 datasets
ChIP NB4 GSE81992.RUNX1.NB4 315 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 142 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 105 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 242 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 258 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 299 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 243 bp overlap
SKI 2 datasets
ChIP HL-60 GSE107553.SKI.HL-60 294 bp overlap
ChIP HL-60_CRISPRCas9_ctrl GSE107553.SKI.HL-60_CRISPRCas9_ctrl 282 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 305 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 206 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 145 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 207 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 271 bp overlap
SPIC 1 dataset
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 142 bp overlap
STAT3 12 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 254 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 195 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 359 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 84 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 173 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 235 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 150 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 212 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 131 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 203 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 187 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 230 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TARDBP 2 datasets
ChIP K-562 ENCSR353HEP.TARDBP.K-562 118 bp overlap
ChIP K-562 GSE120104.TARDBP.K-562 202 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 175 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 326 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 320 bp overlap
TEAD4 1 dataset
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 197 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 216 bp overlap
TP63 1 dataset
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 161 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
VDR 3 datasets
ChIP LX2 GSE38103.VDR.LX2 247 bp overlap
ChIP LX2_CALCIPOTRIOL GSE38103.VDR.LX2_CALCIPOTRIOL 147 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 307 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 195 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 153 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 273 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 231 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF699 1 dataset
ChIP K562 ENCFF852SLL 289 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap