chr13 : 55,576,092 – 55,576,964
872 bp 110 TFs 1 linked gene
This 872 bp open chromatin element is linked to ENSG00000274090 and is bound by 110 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000274090 6.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:55,571,092 – 55,581,964
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 445 bp overlap
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 457 bp overlap
ASCL1 4 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 272 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 656 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
Ar 2 datasets
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
Motif ES_0h ES_0h-Ar_MA0007.4 16 bp overlap
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 167 bp overlap
BHLHE22 3 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 556 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 285 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 326 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 65 bp overlap
Bcl11B 1 dataset
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 55 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 217 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 165 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
Ddit3::Cebpa 1 dataset
Motif ES_0h ES_0h-Ddit3Cebpa_MA0019.2 10 bp overlap
E2F6 3 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 109 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 230 bp overlap
EMX1 2 datasets
ChIP WTC11 ENCFF692RZJ 605 bp overlap
ChIP WTC11 ENCFF692RZJ 424 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 3 datasets
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
Motif ES_0h ES_0h-ESR1_MA0112.4 15 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 268 bp overlap
ESR2 4 datasets
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap
Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
GATA1 1 dataset
Motif ES_0h ES_0h-GATA1_MA0035.5 7 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 225 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
HOXA4 1 dataset
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Isl1 1 dataset
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
JUND 3 datasets
ChIP WA01 ENCSR000BKP.JUND.WA01 119 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 125 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 107 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
MPHOSPH8 1 dataset
ChIP H9 GSE95374.MPHOSPH8.H9 172 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 66 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 65 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 316 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 87 bp overlap
MYOG 2 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 185 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif ES_0h ES_0h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NHLH1 2 datasets
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Motif ES_0h ES_0h-NHLH1_MA0048.3 9 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 84 bp overlap
NR1H2::RXRA 2 datasets
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
Motif ES_0h ES_0h-NR1H2RXRA_MA0115.1 17 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
Neurod2 3 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nr2f6 2 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
Olig2 3 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 166 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 758 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF833NJP 730 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 464 bp overlap
POU5F1B 1 dataset
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RUNX2 1 dataset
Motif ES_0h ES_0h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 585 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 292 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 222 bp overlap
SMAD2 1 dataset
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 188 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 644 bp overlap
STAT1 1 dataset
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Stat4 1 dataset
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 329 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TAF7 3 datasets
ChIP H1 ENCFF061XZZ 337 bp overlap
ChIP H1 ENCFF061XZZ 192 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 301 bp overlap
TAL1::TCF3 1 dataset
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 371 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 280 bp overlap
TEAD4 1 dataset
ChIP WTC11 ENCFF114TZS 341 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif ES_0h ES_0h-TFAP4FLI1_MA1967.2 14 bp overlap
TFDP1 2 datasets
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
Motif ES_0h ES_0h-TFDP1_MA1122.2 8 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 371 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
Tcf12 3 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Tfcp2l1 1 dataset
Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap
Twist2 3 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 130 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF136 1 dataset
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZSCAN29 1 dataset
Motif ES_0h ES_0h-ZSCAN29_MA1602.2 11 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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