chr13 : 55,570,920 55,572,069
1,149 bp 137 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 137 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:55,565,920 – 55,577,069
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
137 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ATF2 4 datasets
ChIP H1 ENCFF295GZO 571 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 588 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 266 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 166 bp overlap
ATF4 1 dataset
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CEBPA 1 dataset
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 242 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 339 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 282 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 375 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 114 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 261 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 362 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 227 bp overlap
CTCF 1 dataset
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 214 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 301 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dmrt1 1 dataset
Motif ES_0h ES_0h-Dmrt1_MA1603.2 9 bp overlap
Dux 1 dataset
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F6 1 dataset
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 321 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 348 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 281 bp overlap
Esrrg 1 dataset
Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap
FOS 1 dataset
Motif ES_0h ES_0h-FOS_MA0476.2 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 552 bp overlap
ChIP DE DE-FOXA2-2 608 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
GATA2 5 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif ES_0h ES_0h-GATA2_MA0036.4 7 bp overlap
Motif ES_0h ES_0h-GATA2_MA0036.4 7 bp overlap
GATA3 1 dataset
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 143 bp overlap
GATA4 9 datasets
ChIP DE DE-GATA4-1 618 bp overlap
ChIP DE DE-GATA4-2 589 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif ES_0h ES_0h-GATA4_MA0482.3 8 bp overlap
Motif ES_0h ES_0h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 400 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 294 bp overlap
GATA5 5 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif ES_0h ES_0h-GATA5_MA0766.3 8 bp overlap
Motif ES_0h ES_0h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 139 bp overlap
ChIP DE DE-GATA6-1 597 bp overlap
ChIP DE DE-GATA6-2 614 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 532 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 593 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 397 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 578 bp overlap
Motif ES_0h ES_0h-GATA6_MA1104.3 8 bp overlap
Motif ES_0h ES_0h-GATA6_MA1104.3 8 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 752 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 445 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 418 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 260 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
Gata3 5 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif ES_0h ES_0h-Gata3_MA0037.5 8 bp overlap
Motif ES_0h ES_0h-Gata3_MA0037.5 8 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
IRF7 1 dataset
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 232 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 224 bp overlap
Jun 1 dataset
Motif ES_0h ES_0h-Jun_MA0489.3 8 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 285 bp overlap
MORC2 2 datasets
ChIP H9 GSE95374.MORC2.H9 609 bp overlap
ChIP H9 GSE95374.MORC2.H9 427 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 156 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 174 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 486 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 295 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 435 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 224 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 874 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 260 bp overlap
ChIP hESC GSE18292.NANOG.hESC 160 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 439 bp overlap
NR2C1 1 dataset
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif ES_0h ES_0h-NR2F2_MA1111.2 7 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
NR5A1 1 dataset
ChIP hESC GSE101087.NR5A1.hESC 465 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
Nr1H2 1 dataset
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 178 bp overlap
PGR 1 dataset
Motif ES_0h ES_0h-PGR_MA2327.1 9 bp overlap
PHOX2A 1 dataset
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 853 bp overlap
ChIP H1 ENCFF566JSR 948 bp overlap
ChIP H1 ENCFF770YBQ 207 bp overlap
ChIP H1 ENCFF833NJP 692 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU5F1 6 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 394 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 351 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 197 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 287 bp overlap
PROP1 1 dataset
Motif ES_0h ES_0h-PROP1_MA0715.1 11 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
Pax7 1 dataset
Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap
Plagl1 1 dataset
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
Ppara 1 dataset
Motif ES_0h ES_0h-Ppara_MA2338.1 7 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RBPJ 2 datasets
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
Motif ES_0h ES_0h-RORB_MA1150.2 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 305 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 292 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 357 bp overlap
SMAD3 1 dataset
ChIP WTC11 ENCFF815YYQ 357 bp overlap
SMARCA4 3 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 248 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 72 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 195 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 185 bp overlap
SOX12 1 dataset
Motif ES_0h ES_0h-SOX12_MA1561.2 10 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 293 bp overlap
SOX21 1 dataset
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
SOX8 1 dataset
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 501 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 377 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SRY 1 dataset
Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap
Sox1 1 dataset
Motif ES_0h ES_0h-Sox1_MA0870.1 15 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Stat6 1 dataset
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TAF7 3 datasets
ChIP H1 ENCFF061XZZ 337 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 194 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 242 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 1149 bp overlap
TRPS1 5 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif ES_0h ES_0h-TRPS1_MA1970.2 8 bp overlap
Motif ES_0h ES_0h-TRPS1_MA1970.2 8 bp overlap
USF2 2 datasets
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP H1 ENCFF434EDF 277 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 140 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZFP42 1 dataset
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF136 1 dataset
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF143 4 datasets
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 402 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 410 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 580 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF324 3 datasets
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF341 1 dataset
Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 89 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 159 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 285 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF76 1 dataset
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap