chr13 : 48,586,635 48,587,172
537 bp 89 TFs 1 linked gene
This 537 bp open chromatin element is linked to LINC00462 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00462 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:48,581,635 – 48,592,172
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 203 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 380 bp overlap
ChIP K562 ENCFF938UXQ 349 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 219 bp overlap
BCL11A 12 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 101 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 158 bp overlap
ChIP CD34_Day7_15min GSE104676.BCL11A.CD34_Day7_15min 88 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 114 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 111 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 130 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 119 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 97 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 112 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 215 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 241 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 173 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 197 bp overlap
BRD2 1 dataset
ChIP K-562 GSE140325.BRD2.K-562 174 bp overlap
BRD4 5 datasets
ChIP COLO-320 GSE73319.BRD4.COLO-320 321 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 537 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 317 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 408 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 201 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 388 bp overlap
ChIP K562 ENCFF963TXY 305 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 463 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 240 bp overlap
ChIP K562 ENCFF673OEZ 400 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 233 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 177 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 93 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 402 bp overlap
ChIP K562 ENCFF403WPG 502 bp overlap
CTCF 6 datasets
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 207 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 161 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 110 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 387 bp overlap
ChIP right atrium auricular region ENCFF696NTN 419 bp overlap
EGR1 2 datasets
ChIP K-562 ENCSR000BNE.EGR1.K-562 192 bp overlap
ChIP K562 ENCFF006PJY 153 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 171 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 193 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 159 bp overlap
EP300 5 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 170 bp overlap
ChIP SK-N-SH ENCFF829RWA 321 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 191 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 134 bp overlap
ChIP tibial nerve ENCFF346AYA 173 bp overlap
ERG 12 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 232 bp overlap
ChIP Jurkat GSE49091.ERG.Jurkat 235 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 157 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 491 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 281 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 319 bp overlap
ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 159 bp overlap
ChIP aortic-endothelial-cell_D21 GSE139377.ERG.aortic-endothelial-cell_D21 270 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 155 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 340 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 194 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 306 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 528 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 439 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 325 bp overlap
FLI1 3 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 273 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 366 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 310 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 158 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 269 bp overlap
ChIP DE DE-FOXA2-2 300 bp overlap
GABPA 2 datasets
ChIP K-562 ENCSR000BLO.GABPA.K-562 212 bp overlap
ChIP K562 ENCFF996TSW 317 bp overlap
GATA1 11 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 219 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 169 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 246 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 226 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 260 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 269 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 303 bp overlap
ChIP erythroblast ENCFF867JAR 468 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 394 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 306 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 287 bp overlap
GATA2 7 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 251 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 306 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 264 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 254 bp overlap
ChIP K562 ENCFF513FTZ 301 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 354 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 239 bp overlap
ChIP DE DE-GATA4-1 411 bp overlap
ChIP DE DE-GATA4-2 425 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 466 bp overlap
ChIP DE DE-GATA6-2 327 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 404 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 502 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 375 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 218 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 88 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR000BMG.HDAC2.K-562 153 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 328 bp overlap
ChIP K562 ENCFF744ALD 131 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
HOXB8 1 dataset
ChIP K-562 GSE121208.HOXB8.K-562 335 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 183 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF824TGK 250 bp overlap
ChIP GM12878 ENCFF824TGK 143 bp overlap
ChIP K562 ENCFF771OHZ 488 bp overlap
IRF4 2 datasets
ChIP B-cell GSE142493.IRF4.B-cell 212 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 159 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 179 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 146 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 196 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 243 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 59 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 190 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 267 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 388 bp overlap
LMO2 2 datasets
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 254 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 389 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 311 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 235 bp overlap
MEIS1 1 dataset
ChIP SEM GSE38339.MEIS1.SEM 130 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 429 bp overlap
ChIP K562 ENCFF320GSD 313 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 306 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 439 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 281 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 94 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR910JAI.NCOR1.K-562 342 bp overlap
ChIP K-562 ENCSR798ILC.NCOR1.K-562 314 bp overlap
ChIP K562 ENCFF788MPU 179 bp overlap
ChIP K562 ENCFF866HRM 114 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 274 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 227 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 233 bp overlap
NR2F2 2 datasets
ChIP liver ENCSR168SMX.NR2F2.liver 181 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 305 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 129 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 182 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 265 bp overlap
ChIP K562 ENCFF286KMN 417 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 291 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 272 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 342 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 214 bp overlap
POLR2A 5 datasets
ChIP K562 ENCFF514URW 377 bp overlap
ChIP prostate gland ENCFF881OMH 320 bp overlap
ChIP sigmoid colon ENCFF725QFT 240 bp overlap
ChIP sigmoid colon ENCFF748YVT 265 bp overlap
ChIP sigmoid colon ENCFF754JQR 251 bp overlap
RAD21 2 datasets
ChIP lymphoblast GSE155324.RAD21.lymphoblast 458 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 371 bp overlap
REST 2 datasets
ChIP K-562 ENCSR000BMW.REST.K-562 189 bp overlap
ChIP K562 ENCFF430APM 231 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 192 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 188 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 134 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 323 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 537 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 421 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 378 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 436 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 501 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 452 bp overlap
SPI1 8 datasets
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 242 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 163 bp overlap
ChIP GM12878 ENCFF134LCP 268 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 225 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 143 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 166 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 140 bp overlap
SPIB 2 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 147 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 215 bp overlap
STAT3 2 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 130 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 310 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 122 bp overlap
TAL1 18 datasets
ChIP CD34 GSE52924.TAL1.CD34 213 bp overlap
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 328 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 175 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 396 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 380 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 289 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 220 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 265 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 359 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 300 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 319 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 268 bp overlap
ChIP K562 ENCFF620GMX 223 bp overlap
ChIP K562 ENCFF661CCK 100 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 136 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 210 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 341 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 269 bp overlap
TBP 1 dataset
ChIP K-562 ENCSR000EHA.TBP.K-562 66 bp overlap
TBX21 4 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 182 bp overlap
ChIP GM12878 ENCFF951HUW 224 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 335 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 192 bp overlap
TCF12 5 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 393 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 262 bp overlap
ChIP K562 ENCFF909RDY 397 bp overlap
ChIP K562 ENCFF931DJY 279 bp overlap
ChIP SK-N-SH ENCFF147AHB 189 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 364 bp overlap
ChIP K562 ENCFF319QZT 353 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 172 bp overlap
TRIM24 4 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 315 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 211 bp overlap
ChIP K562 ENCFF284DKY 381 bp overlap
ChIP K562 ENCFF616RIL 440 bp overlap
ZBTB7A 3 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 342 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 132 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 193 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR322CFO.ZEB2.K-562 286 bp overlap
ZNF121 2 datasets
ChIP HepG2 ENCFF343YSL 80 bp overlap
ChIP K562 ENCFF314GND 96 bp overlap
ZNF24 4 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 336 bp overlap
ChIP K-562 ENCSR117WTM.ZNF24.K-562 269 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 349 bp overlap
ChIP K562 ENCFF877JCX 476 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 375 bp overlap