chr13 : 48,533,833 – 48,534,534
701 bp 99 TFs 4 linked genes
This 701 bp open chromatin element is linked to 4 target genes and is bound by 99 transcription factors.
Linked Genes
4 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RCBTB2 753 bp At TSS Proximity
ENSG00000289900 970 bp At TSS Proximity
ENSG00000274929 1.2 kb Proximal Proximity
ENSG00000287599 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:48,528,833 – 48,539,534
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 330 bp overlap
ChIP K562 ENCFF938UXQ 283 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 252 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 244 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 69 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 181 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 101 bp overlap
BRD4 6 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 305 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 436 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 214 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 234 bp overlap
ChIP OCI-AML3 GSE104745.BRD4.OCI-AML3 205 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 217 bp overlap
CBFA2T2 1 dataset
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 193 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 257 bp overlap
ChIP K562 ENCFF673OEZ 194 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 496 bp overlap
CDK9 1 dataset
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 333 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 127 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 255 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 234 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 322 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 379 bp overlap
CTCF 4 datasets
ChIP OCI-LY1 ENCFF455ESK 163 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 268 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 313 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 327 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 536 bp overlap
Crx 2 datasets
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 273 bp overlap
ChIP K562 ENCFF775HUO 439 bp overlap
DPRX 1 dataset
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
Dmbx1 1 dataset
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 503 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 180 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 224 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 166 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 242 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 253 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 304 bp overlap
ETS1 4 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 254 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 558 bp overlap
ChIP THP-6_shEts1 GSE138516.ETS1.THP-6_shEts1 255 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 197 bp overlap
FLI1 1 dataset
ChIP NB4 GSE23730.FLI1.NB4 209 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 292 bp overlap
ChIP DE DE-FOXA2-1 540 bp overlap
ChIP DE DE-FOXA2-2 431 bp overlap
GABPB1 1 dataset
ChIP K-562 ENCSR138YYY.GABPB1.K-562 296 bp overlap
GATA1 14 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 303 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 255 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 338 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 302 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 326 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 197 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 240 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 230 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF867JAR 321 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 556 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 202 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 215 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 254 bp overlap
GATA1::TAL1 1 dataset
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 4 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 289 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 158 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 371 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 240 bp overlap
ChIP DE DE-GATA4-1 621 bp overlap
ChIP DE DE-GATA4-2 557 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 445 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 495 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 148 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 315 bp overlap
ChIP DE DE-GATA6-1 533 bp overlap
ChIP DE DE-GATA6-2 613 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 462 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 558 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 490 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 609 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 573 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 531 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 545 bp overlap
ChIP foregut GSE117136.GATA6.foregut 408 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 327 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 420 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 342 bp overlap
GSC 2 datasets
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 218 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 419 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 221 bp overlap
HMBOX1 4 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 320 bp overlap
ChIP K562 ENCFF055GAZ 531 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
ChIP K562 ENCFF317JJX 367 bp overlap
Hoxd13 1 dataset
Motif DE_48h DE_48h-Hoxd13_MA0909.4 7 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 178 bp overlap
ChIP HL-60 GSE63484.JMJD1C.HL-60 161 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 261 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 183 bp overlap
ChIP SET-2_GSK GSE121424.KDM1A.SET-2_GSK 216 bp overlap
KMT2A 7 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 124 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 295 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 241 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 382 bp overlap
ChIP RS4-11 GSE38403.KMT2A.RS4-11 304 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 574 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 221 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 254 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 232 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 247 bp overlap
LEF1 1 dataset
ChIP K-562 ENCSR343ELW.LEF1.K-562 251 bp overlap
MAX 1 dataset
ChIP NB4 ENCFF966MWB 263 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 277 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 219 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 292 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 247 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 580 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 274 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR914NEI.MTA3.K-562 445 bp overlap
MYC 1 dataset
ChIP NB4 ENCFF142PRP 317 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 502 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 391 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 307 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 233 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 161 bp overlap
NFE2L2 1 dataset
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 116 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 299 bp overlap
NRF1 9 datasets
ChIP K-562 ENCSR998AJK.NRF1.K-562 279 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 277 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 159 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 124 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 151 bp overlap
ChIP K562 ENCFF130SGK 244 bp overlap
ChIP K562 ENCFF689EWI 140 bp overlap
ChIP K562 ENCFF791UHF 373 bp overlap
ChIP K562 ENCFF791UHF 174 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 258 bp overlap
NUTM1 3 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 701 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 388 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 87 bp overlap
OTX1 2 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 356 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 361 bp overlap
PITX1 2 datasets
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
PKNOX1 1 dataset
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 244 bp overlap
POLR2A 1 dataset
ChIP GM12891 ENCFF012SUT 241 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 291 bp overlap
RAD21 2 datasets
ChIP MDM GSE103477.RAD21.MDM 701 bp overlap
ChIP MDM_IFNb GSE103477.RAD21.MDM_IFNb 329 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 365 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 215 bp overlap
RHOXF1 2 datasets
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 324 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 388 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 363 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 363 bp overlap
SMARCA4 8 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 450 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 352 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 380 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 167 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 269 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 331 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 225 bp overlap
ChIP K562 ENCFF506JCB 404 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 387 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 378 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 296 bp overlap
ChIP K562 ENCFF059YCJ 347 bp overlap
SPI1 2 datasets
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 117 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 332 bp overlap
SUPT5H 3 datasets
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 183 bp overlap
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 371 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 496 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 390 bp overlap
TAL1 13 datasets
ChIP CD34 GSE52924.TAL1.CD34 173 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 261 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 260 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 194 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 171 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 179 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 347 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 215 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 224 bp overlap
ChIP K562 ENCFF620GMX 148 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 225 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 147 bp overlap
TCF12 1 dataset
ChIP K-562 ENCSR744WOO.TCF12.K-562 242 bp overlap
TRIM24 1 dataset
ChIP K-562 ENCSR907MZR.TRIM24.K-562 211 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
YY1 2 datasets
ChIP ALL GSE145549.YY1.ALL 518 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 218 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 155 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 238 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 453 bp overlap
ZKSCAN1 1 dataset
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 188 bp overlap
ZNF577 1 dataset
ChIP HEK293 ENCSR776MDR.ZNF577.HEK293 68 bp overlap
ZNF582 1 dataset
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
ZNF667 1 dataset
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 418 bp overlap
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