chr12 : 57,838,321 57,838,557
236 bp 100 TFs 1 linked gene
This 236 bp open chromatin element is linked to CTDSP2 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CTDSP2 8.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:57,833,321 – 57,843,557
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ADNP 1 dataset
ChIP K562 ENCFF492SKF 214 bp overlap
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 139 bp overlap
AR 1 dataset
ChIP breast_tumor_Male_7 GSE104399.AR.breast_tumor_Male_7 236 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 148 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 190 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 101 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 101 bp overlap
BRD4 4 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 155 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 155 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 140 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 236 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 73 bp overlap
CDKN1B 2 datasets
ChIP MDA-BoM-1833_shp27 GSE112444.CDKN1B.MDA-BoM-1833_shp27 179 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 130 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 80 bp overlap
CHD4 1 dataset
ChIP K562 ENCFF933NKI 236 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 86 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 214 bp overlap
CTCF 2 datasets
ChIP H1 ENCFF414GZI 152 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 203 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 236 bp overlap
EED 2 datasets
ChIP GM12878 ENCFF266FYW 129 bp overlap
ChIP GM12878 ENCFF266FYW 236 bp overlap
ELF1 4 datasets
ChIP GM12878 ENCFF432UGA 146 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 107 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 53 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 136 bp overlap
ERG 2 datasets
ChIP RWPE-1 GSE114241.ERG.RWPE-1 236 bp overlap
ChIP SEM GSE117864.ERG.SEM 154 bp overlap
ESR1 1 dataset
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 175 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 165 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 66 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 236 bp overlap
FOS 1 dataset
ChIP endothelial cell of umbilical vein ENCFF415XBG 133 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 59 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 81 bp overlap
ChIP HEK293 ENCFF299RSE 106 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 236 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 236 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 236 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 210 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 236 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 121 bp overlap
HMGB2 2 datasets
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 236 bp overlap
ChIP IMR-90_proliferating GSE98245.HMGB2.IMR-90_proliferating 236 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 139 bp overlap
IKZF1 3 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 160 bp overlap
ChIP GM12878 ENCFF824TGK 236 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 236 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 236 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 158 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 147 bp overlap
JUN 7 datasets
ChIP 786-O GSE86092.JUN.786-O 236 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 197 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 114 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 132 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 207 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 109 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 164 bp overlap
KDM1A 4 datasets
ChIP H1 ENCFF696SGD 64 bp overlap
ChIP K562 ENCFF133OLU 57 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 236 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 58 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCFF326EGX 122 bp overlap
KMT2A 2 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 131 bp overlap
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 81 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 115 bp overlap
MAZ 4 datasets
ChIP HEK293 ENCFF994GSG 215 bp overlap
ChIP HEK293 ENCFF994GSG 236 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 236 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 147 bp overlap
MED1 3 datasets
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 117 bp overlap
ChIP RH4 GSE83726.MED1.RH4 217 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 115 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 236 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 134 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 236 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 193 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 83 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 115 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 210 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 74 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 236 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCFF965AKM 52 bp overlap
NKX2-1 2 datasets
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 236 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 144 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 69 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 69 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 150 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 190 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 169 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 86 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 55 bp overlap
POLR2A 7 datasets
ChIP GM12878 ENCFF521FXC 215 bp overlap
ChIP GM18951 ENCFF079KKO 236 bp overlap
ChIP GM18951 ENCFF079KKO 75 bp overlap
ChIP GM23338 ENCFF450WCS 106 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 104 bp overlap
ChIP heart left ventricle ENCFF591JWH 107 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 106 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 221 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 117 bp overlap
ChIP HEK293 ENCFF145WQQ 133 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 158 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 236 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 78 bp overlap
ChIP HepG2 ENCFF939HTZ 78 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 50 bp overlap
RELA 5 datasets
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 89 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 89 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 157 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 105 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 67 bp overlap
RUNX1 2 datasets
ChIP NALM-6 GSE126300.RUNX1.NALM-6 110 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 69 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 135 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 107 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 236 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 150 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 236 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 72 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 120 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 60 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 236 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCFF327LDR 59 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 200 bp overlap
SP2 4 datasets
ChIP HEK293 ENCFF181QXT 74 bp overlap
ChIP HEK293 ENCFF181QXT 160 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 219 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 236 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 236 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 152 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 236 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 236 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 236 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 163 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 110 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 123 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 192 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 219 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 148 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 175 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 81 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 98 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 121 bp overlap
TFAP4 1 dataset
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 86 bp overlap
TP53 3 datasets
ChIP GM06170 GSE55727.TP53.GM06170 66 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 66 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 131 bp overlap
TP63 2 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 108 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 103 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF582MWI 236 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 82 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 82 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 145 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 78 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 102 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 193 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 128 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 149 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 236 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 157 bp overlap
ZMYM3 1 dataset
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 96 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 205 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 126 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 59 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 164 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 236 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 153 bp overlap