chr11 : 127,000,299 – 127,000,899
600 bp 82 TFs 2 linked genes
This 600 bp open chromatin element is linked to KIRREL3-AS3 and KIRREL3 and is bound by 82 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KIRREL3-AS3 2.0 kb Proximal Proximity
KIRREL3 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:126,995,299 – 127,005,899
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 600 bp overlap
ChIP H1 ENCFF399KAM 517 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 600 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 245 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 557 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 572 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 591 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 434 bp overlap
BRD4 5 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 572 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 290 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 193 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 516 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 301 bp overlap
CHD1 5 datasets
ChIP IMR-90 ENCFF921SVK 460 bp overlap
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 172 bp overlap
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 269 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 488 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 551 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 268 bp overlap
CTCF 7 datasets
ChIP MM1-S GSE43743.CTCF.MM1-S 171 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 156 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 386 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 131 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 389 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 178 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 299 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 415 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 367 bp overlap
ChIP BLaER1 ENCFF335XTP 150 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 171 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 208 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 269 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 224 bp overlap
EZH2 43 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 600 bp overlap
ChIP A673 ENCFF790MVL 340 bp overlap
ChIP A673 ENCFF790MVL 78 bp overlap
ChIP A673 ENCFF955JRZ 525 bp overlap
ChIP A673 ENCFF955JRZ 301 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 439 bp overlap
ChIP GM23338 ENCFF613YON 177 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 600 bp overlap
ChIP H1 ENCFF232NZA 600 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 175 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 334 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 253 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 600 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 140 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 214 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 600 bp overlap
ChIP SK-N-MC ENCFF434OHW 600 bp overlap
ChIP SK-N-MC ENCFF674XUJ 600 bp overlap
ChIP T-REx-293_K27WT GSE118954.EZH2.T-REx-293_K27WT 227 bp overlap
ChIP T-REx-293_K27WT_12h GSE118954.EZH2.T-REx-293_K27WT_12h 364 bp overlap
ChIP T-REx-293_K27WT_24h GSE118954.EZH2.T-REx-293_K27WT_24h 200 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 600 bp overlap
ChIP T-REx-293_K27WT_72h GSE118954.EZH2.T-REx-293_K27WT_72h 513 bp overlap
ChIP T98G GSE112240.EZH2.T98G 221 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 173 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 505 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 206 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 600 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 475 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 487 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 299 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 125 bp overlap
ChIP hESC GSE113817.EZH2.hESC 600 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 210 bp overlap
ChIP hepatocyte ENCFF118DKH 161 bp overlap
ChIP hepatocyte ENCFF552DZB 267 bp overlap
ChIP hepatocyte ENCFF552DZB 201 bp overlap
ChIP keratinocyte ENCFF070STK 403 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 600 bp overlap
ChIP neural progenitor cell ENCFF018MKA 593 bp overlap
ChIP neural progenitor cell ENCFF472NFV 572 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 273 bp overlap
EZH2_phosphoT487 6 datasets
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 113 bp overlap
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 193 bp overlap
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 426 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 600 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 600 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 600 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 196 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 272 bp overlap
GRHL2 1 dataset
ChIP OVCA429 GSE71018.GRHL2.OVCA429 160 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 343 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 288 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 199 bp overlap
IRF1 1 dataset
ChIP HAEC_IL1b_4h GSE89970.IRF1.HAEC_IL1b_4h 139 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 147 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 600 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 452 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 600 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 600 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 423 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 600 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 600 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 225 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 200 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 600 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 464 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 180 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 217 bp overlap
MAX 6 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 183 bp overlap
ChIP H1 ENCFF914VQY 282 bp overlap
ChIP SK-N-SH ENCFF285LXR 279 bp overlap
ChIP SK-N-SH ENCFF285LXR 77 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 101 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 180 bp overlap
MAZ 2 datasets
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 200 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 111 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 188 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MXI1 5 datasets
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 228 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 146 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 600 bp overlap
ChIP neural cell ENCFF623HQN 543 bp overlap
ChIP neural cell ENCFF623HQN 449 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 173 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 423 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 296 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 371 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 321 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 304 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 220 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 432 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 425 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 557 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 600 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 166 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 134 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 6 datasets
ChIP H54 ENCFF398BXN 274 bp overlap
ChIP IMR-90 ENCFF672YWV 302 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 413 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP neural cell ENCFF604SPB 263 bp overlap
ChIP sigmoid colon ENCFF754JQR 310 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 302 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 148 bp overlap
ChIP NCCIT GSE71675.PRDM14.NCCIT 265 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 600 bp overlap
ChIP neural cell ENCFF564MOT 498 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 148 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 171 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 275 bp overlap
REST 4 datasets
ChIP hippocampus GSE144226.REST.hippocampus 568 bp overlap
ChIP neural ENCSR000BTV.REST.neural 491 bp overlap
ChIP neural cell ENCFF882LXX 356 bp overlap
ChIP neural cell ENCFF882LXX 156 bp overlap
RNF2 7 datasets
ChIP H1 ENCFF239FFS 506 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 222 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 188 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 600 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 354 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 600 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 600 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 413 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 249 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 580 bp overlap
SIN3A 3 datasets
ChIP A549 ENCFF752ATT 529 bp overlap
ChIP A549 ENCFF752ATT 327 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 518 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 92 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 123 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 483 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 89 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCB1 4 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 348 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 185 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 438 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 477 bp overlap
SMC1 1 dataset
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 203 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 600 bp overlap
ChIP neural cell ENCFF795YGY 488 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 123 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 293 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SUZ12 13 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 291 bp overlap
ChIP H1 ENCFF881NFR 600 bp overlap
ChIP H1 ENCFF881NFR 600 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 378 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 283 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 600 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 95 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 423 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 600 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 460 bp overlap
ChIP NT2/D1 ENCFF574SXS 600 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 600 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 600 bp overlap
TAF1 4 datasets
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 166 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 203 bp overlap
ChIP neural cell ENCFF468SPD 526 bp overlap
ChIP neural cell ENCFF468SPD 326 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 195 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 237 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 190 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 239 bp overlap
TP53 3 datasets
ChIP GM00011 GSE55727.TP53.GM00011 266 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 94 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 206 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 422 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ChIP HEK293 ENCFF336CWQ 220 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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