chr1 : 199,733,969 199,734,517
548 bp 141 TFs 0 linked genes
This 548 bp open chromatin element has no linked target genes and is bound by 141 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:199,728,969 – 199,739,517
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
141 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
AR 6 datasets
ChIP LNCaP GSE94682.AR.LNCaP 71 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.AR.LNCaP_FENG_shFOXA1_Ethanol 116 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 61 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 166 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 148 bp overlap
ChIP VCaP_Veh GSE125245.AR.VCaP_Veh 181 bp overlap
ARGFX 1 dataset
Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap
ATF3 1 dataset
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 125 bp overlap
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BRD2 3 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 369 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 192 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 212 bp overlap
BRD4 1 dataset
ChIP HCC1937 GSE124748.BRD4.HCC1937 263 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 548 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 223 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 150 bp overlap
DRGX 1 dataset
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
EGR1 1 dataset
ChIP HCT-116 ENCSR000BRZ.EGR1.HCT-116 61 bp overlap
EMX1 1 dataset
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
ERG 5 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 77 bp overlap
ChIP Jurkat GSE49091.ERG.Jurkat 125 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 136 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 117 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 93 bp overlap
ESR1 1 dataset
ChIP T-47D ENCSR000BQD.ESR1.T-47D 132 bp overlap
ESX1 1 dataset
Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap
ETV1 3 datasets
ChIP LNCaP GSE47120.ETV1.LNCaP 64 bp overlap
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 73 bp overlap
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 87 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
EVX1 1 dataset
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 249 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 354 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 289 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 418 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 471 bp overlap
FOXA1 10 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 255 bp overlap
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 141 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 393 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 101 bp overlap
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 140 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 59 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 53 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 102 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 132 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 187 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 173 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 444 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 548 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 67 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 67 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 163 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 85 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 505 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 548 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 548 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 548 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 548 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 548 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 364 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 227 bp overlap
GLIS3 1 dataset
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
GSX1 1 dataset
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HNF4A 1 dataset
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 200 bp overlap
HOXA1 1 dataset
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 83 bp overlap
HOXB2 1 dataset
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 198 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 548 bp overlap
HOXC8 1 dataset
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ISX 1 dataset
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 312 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 548 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 548 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 85 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 525 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 457 bp overlap
NANOG 4 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 304 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 262 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 310 bp overlap
ChIP hESC GSE18292.NANOG.hESC 98 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 326 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 272 bp overlap
PAX4 1 dataset
Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap
PDX1 1 dataset
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
PHIP 3 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 548 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 548 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 301 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 197 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 151 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 408 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 255 bp overlap
PRRX1 1 dataset
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
RAX2 1 dataset
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
RB1 1 dataset
ChIP MCF-7_siH1.2 GSE98728.RB1.MCF-7_siH1.2 181 bp overlap
RELA 1 dataset
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 172 bp overlap
SHOX 1 dataset
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 548 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 548 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 548 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 490 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 465 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 489 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 548 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 228 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 548 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 223 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 548 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 430 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 548 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 484 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 87 bp overlap
SP1 1 dataset
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 136 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 126 bp overlap
Shox2 1 dataset
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 299 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 250 bp overlap
TBX19 1 dataset
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 5 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 548 bp overlap
ChIP HCT116 ENCFF038POZ 319 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 354 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 270 bp overlap
TEAD1 1 dataset
ChIP MSTO GSE68170.TEAD1.MSTO 149 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 104 bp overlap
TLX2 1 dataset
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 162 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 257 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 205 bp overlap
ZNF350 1 dataset
ChIP HEK293 GSE76494.ZNF350.HEK293 128 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 155 bp overlap
mix-a 1 dataset
Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap