chr11 : 44,310,475 44,310,903
428 bp 77 TFs 1 linked gene
This 428 bp open chromatin element is linked to ALX4 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ALX4 336 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:44,305,475 – 44,315,903
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 357 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 397 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 428 bp overlap
BRD2 2 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 128 bp overlap
ChIP SUM149PT_R_JQ1 GSE131097.BRD2.SUM149PT_R_JQ1 232 bp overlap
BRD4 4 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 216 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 55 bp overlap
ChIP hESC GSE33281.BRD4.hESC 60 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 308 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 131 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 233 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 428 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 128 bp overlap
CTCF 9 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 428 bp overlap
ChIP A673 ENCFF123WOM 388 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 215 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 145 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 197 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 147 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 231 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 273 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 245 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 164 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 252 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 134 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 160 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 186 bp overlap
ESR1 7 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 247 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 238 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 428 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 428 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 364 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 334 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 313 bp overlap
EZH2 29 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 428 bp overlap
ChIP GM23248 ENCFF404ZHM 225 bp overlap
ChIP GM23248 ENCFF404ZHM 60 bp overlap
ChIP GM23248 ENCFF506FWX 393 bp overlap
ChIP GM23338 ENCFF613YON 428 bp overlap
ChIP GM23338 ENCFF886DXX 50 bp overlap
ChIP H1 ENCFF232NZA 428 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 428 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 428 bp overlap
ChIP HepG2 ENCFF912EIW 125 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 425 bp overlap
ChIP PC-3 ENCFF928VSN 421 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 52 bp overlap
ChIP astrocyte ENCFF365JTP 284 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 69 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 428 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 359 bp overlap
ChIP fibroblast of lung ENCFF479BAW 291 bp overlap
ChIP hepatocyte ENCFF552DZB 428 bp overlap
ChIP keratinocyte ENCFF070STK 136 bp overlap
ChIP keratinocyte ENCFF070STK 109 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 177 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 428 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 428 bp overlap
ChIP neural cell ENCFF610EPB 399 bp overlap
ChIP neural cell ENCFF610EPB 157 bp overlap
ChIP neural progenitor cell ENCFF018MKA 428 bp overlap
ChIP neural progenitor cell ENCFF472NFV 428 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 152 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 312 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 310 bp overlap
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 195 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 128 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 163 bp overlap
GATA6 1 dataset
ChIP DE_D1 S41-DE-d1-GATA6-exp2 226 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 72 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 126 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 188 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 219 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 409 bp overlap
JARID2 1 dataset
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 240 bp overlap
JUN 2 datasets
ChIP HUES-8 GSE109524.JUN.HUES-8 331 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 392 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 170 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 208 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 147 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 302 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 428 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 116 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 212 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 195 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 192 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 142 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 159 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 254 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 250 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 238 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 123 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 146 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 191 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 428 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 383 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 364 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 331 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 428 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 104 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 212 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 86 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 144 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 93 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 311 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 375 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 112 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 214 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 191 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 285 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 210 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 413 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 428 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 178 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 386 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shGFP GSE94275.SMARCA2.SK-N-MC_shGFP 264 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 183 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 428 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 386 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 404 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 262 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 226 bp overlap
SMC1 1 dataset
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 186 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 192 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 54 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 244 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 255 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 428 bp overlap
STAT3 2 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 190 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 103 bp overlap
SUZ12 7 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 228 bp overlap
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 64 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 428 bp overlap
ChIP H1 ENCFF507HGF 69 bp overlap
ChIP H1 ENCFF881NFR 428 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 255 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 129 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 127 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 375 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 178 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 290 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 202 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 272 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 275 bp overlap
ZNF143 2 datasets
ChIP WA09 GSE105028.ZNF143.WA09 263 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 205 bp overlap
ZNF202 1 dataset
ChIP HEK293T GSE78099.ZNF202.HEK293T 93 bp overlap
ZNF398 2 datasets
ChIP H9 GSE133630.ZNF398.H9 179 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 162 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 129 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 134 bp overlap