chr10 : 129,949,957 – 129,950,321
364 bp 93 TFs 1 linked gene
This 364 bp open chromatin element is linked to EBF3 and is bound by 93 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EBF3 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:129,944,957 – 129,955,321
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 212 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 200 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 280 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 364 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 364 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 247 bp overlap
BRD4 8 datasets
ChIP BE2C GSE80151.BRD4.BE2C 247 bp overlap
ChIP HEK293T GSE51633.BRD4.HEK293T 171 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 364 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 193 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 247 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 223 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 137 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 168 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 166 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 136 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 97 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 343 bp overlap
CTCF 3 datasets
ChIP brain ENCFF685VRG 224 bp overlap
ChIP coronary artery ENCFF483TFF 66 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 212 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 224 bp overlap
ETS1 3 datasets
ChIP SCC-25 GSE109884.ETS1.SCC-25 298 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 273 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 164 bp overlap
ETV1 2 datasets
ChIP GIST GSE22441.ETV1.GIST 142 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 159 bp overlap
EZH2 4 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 364 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 318 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 239 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 236 bp overlap
FLI1 5 datasets
ChIP A-673 GSE99959.FLI1.A-673 263 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 273 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 238 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 175 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 235 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 234 bp overlap
FOXP2 2 datasets
ChIP PFSK-1 ENCFF349WGE 301 bp overlap
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 188 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 136 bp overlap
HAND2 3 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 111 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 319 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 248 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 238 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 302 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 186 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 232 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 207 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 242 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 232 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 213 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 206 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 214 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 227 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 251 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 230 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 254 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 190 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 331 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 222 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 336 bp overlap
MAZ 5 datasets
ChIP HEK293 ENCFF994GSG 234 bp overlap
ChIP HEK293 ENCFF994GSG 263 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 364 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 364 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 364 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 116 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 267 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 248 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 154 bp overlap
MYC 2 datasets
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 196 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 208 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 357 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 227 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 161 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 192 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 273 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 297 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 284 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 357 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 299 bp overlap
MYOD1 4 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 317 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 261 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 136 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 151 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 190 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 185 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 180 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 364 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 268 bp overlap
POLR2A 5 datasets
ChIP gastrocnemius medialis ENCFF145VIB 364 bp overlap
ChIP heart left ventricle ENCFF591JWH 364 bp overlap
ChIP sigmoid colon ENCFF754JQR 349 bp overlap
ChIP thyroid gland ENCFF979LRR 364 bp overlap
ChIP tibial nerve ENCFF983HAU 364 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 203 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 279 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 363 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 94 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 82 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 3 datasets
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 355 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 364 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 217 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 259 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 163 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 184 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 285 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 364 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 291 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 138 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 364 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 298 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 212 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 291 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 209 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 66 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 198 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 126 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 198 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 189 bp overlap
SUPT5H 1 dataset
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 259 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 193 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 208 bp overlap
TAF1 2 datasets
ChIP PFSK-1 ENCFF982LZL 364 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 168 bp overlap
TBP 1 dataset
ChIP hESC_10h GSE122298.TBP.hESC_10h 142 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 135 bp overlap
TP53 1 dataset
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 256 bp overlap
TP63 6 datasets
ChIP HCC95 GSE46837.TP63.HCC95 146 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 250 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 180 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 205 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 197 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 297 bp overlap
TWIST1 3 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 333 bp overlap
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 333 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 316 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 311 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 125 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ChIP HEK293 GSE76494.ZBTB18.HEK293 153 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 225 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 282 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 226 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 135 bp overlap
ZBTB6 4 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ChIP HEK293 ENCFF881ECZ 313 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 317 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 296 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 231 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF263 3 datasets
ChIP HEK293 ENCFF336CWQ 279 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 197 bp overlap
ChIP WTC11 ENCFF893RTM 364 bp overlap
ZNF333 1 dataset
ChIP HEK293T GSE78099.ZNF333.HEK293T 275 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 326 bp overlap
ChIP HEK293 ENCFF784SLD 198 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 267 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 267 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 213 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 364 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 162 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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