chr10 : 99,524,178 99,524,594
416 bp 87 TFs 2 linked genes
This 416 bp open chromatin element is linked to LINC01475 and NKX2-3 and is bound by 87 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC01475 2.8 kb Proximal Proximity
NKX2-3 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:99,519,178 – 99,529,594
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ADNP 1 dataset
ChIP K562 ENCFF492SKF 416 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 318 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 184 bp overlap
BCOR 4 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 291 bp overlap
ChIP K562 ENCFF343XWA 257 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 416 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 331 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 416 bp overlap
BRD4 1 dataset
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 249 bp overlap
CTCF 1 dataset
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 217 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 108 bp overlap
ChIP BLaER1 ENCFF335XTP 130 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 230 bp overlap
EZH2 12 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 402 bp overlap
ChIP GM23248 ENCFF404ZHM 256 bp overlap
ChIP GM23338 ENCFF613YON 173 bp overlap
ChIP H1 ENCFF232NZA 348 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 310 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 416 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 59 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 254 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 258 bp overlap
ChIP neural progenitor cell ENCFF018MKA 416 bp overlap
ChIP neural progenitor cell ENCFF018MKA 416 bp overlap
ChIP neural progenitor cell ENCFF472NFV 416 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 266 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 416 bp overlap
ChIP DE DE-FOXA2-2 416 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 241 bp overlap
GATA1 1 dataset
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 169 bp overlap
GATA2 5 datasets
ChIP ESF GSE108408.GATA2.ESF 290 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 274 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 334 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 263 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF352QVM 416 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 379 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 228 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 416 bp overlap
ChIP DE DE-GATA4-2 416 bp overlap
ChIP foregut GSE117136.GATA4.foregut 416 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 396 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 416 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 416 bp overlap
ChIP DE DE-GATA6-2 416 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 416 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 416 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 416 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 416 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 416 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 416 bp overlap
ChIP foregut GSE117136.GATA6.foregut 416 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 416 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 333 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 343 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 366 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 299 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 207 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 410 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 416 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 416 bp overlap
GTF2I 3 datasets
ChIP K562 ENCFF539BYI 237 bp overlap
ChIP K562 ENCFF539BYI 385 bp overlap
ChIP WTC11 ENCFF255XXZ 217 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 210 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 212 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 224 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 165 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 416 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 416 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 416 bp overlap
KDM1A 16 datasets
ChIP H1 ENCFF696SGD 235 bp overlap
ChIP HepG2 ENCFF240UWG 408 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 283 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 146 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 247 bp overlap
ChIP K562 ENCFF128TYE 340 bp overlap
ChIP K562 ENCFF934ZRG 334 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 150 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 171 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 105 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 245 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 172 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 185 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 416 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 307 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 215 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 197 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 379 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 416 bp overlap
KLF5 3 datasets
ChIP HEK293 GSE88976.KLF5.HEK293 215 bp overlap
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 271 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 231 bp overlap
KMT2A 1 dataset
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 377 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 343 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 292 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 415 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 221 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 239 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 115 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 207 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 416 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 109 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 275 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 416 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 375 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 308 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF446ZGT 258 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 343 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 416 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 280 bp overlap
PTBP1 4 datasets
ChIP K-562 ENCSR948KMB.PTBP1.K-562 196 bp overlap
ChIP K-562 GSE120104.PTBP1.K-562 196 bp overlap
ChIP K562 ENCFF238NLS 310 bp overlap
ChIP K562 ENCFF773HPT 313 bp overlap
RARA 2 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 376 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 249 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 306 bp overlap
ChIP K562 ENCFF248CGR 140 bp overlap
ChIP K562 ENCFF957ORK 140 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 114 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 416 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 416 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 274 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 416 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 112 bp overlap
SMARCC1 6 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 379 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 215 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 249 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 195 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 149 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 208 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 416 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 194 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 352 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 416 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 251 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 187 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 361 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 416 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 227 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 206 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 282 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 416 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 349 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 370 bp overlap
ZEB1 1 dataset
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 255 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 276 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 249 bp overlap
ZFP36 7 datasets
ChIP A-549 ENCSR294JWV.ZFP36.A-549 223 bp overlap
ChIP A549 ENCFF505LUC 214 bp overlap
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 159 bp overlap
ChIP HeLa-S3 ENCFF281CEA 156 bp overlap
ChIP HeLa-S3 ENCSR184MFH.ZFP36.HeLa-S3 89 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 215 bp overlap
ChIP K562 ENCFF255RZG 156 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 365 bp overlap
ZMYM3 7 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 146 bp overlap
ChIP Hep-G2_AC_JH39-2-2B9 GSE97661.ZMYM3.Hep-G2_AC_JH39-2-2B9 196 bp overlap
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 190 bp overlap
ChIP HepG2 ENCFF408KTI 290 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 233 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 249 bp overlap
ChIP K562 ENCFF361LXT 247 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 152 bp overlap
ZNF140 1 dataset
ChIP HEK293 ENCFF501RUF 310 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 272 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCFF937QHI 319 bp overlap
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 336 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 140 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 308 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 416 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 325 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 116 bp overlap
ZNF768 4 datasets
ChIP HEK293 ENCFF579QSI 179 bp overlap
ChIP HEK293 ENCSR070HWF.ZNF768.HEK293 237 bp overlap
ChIP HEK293 GSE76494.ZNF768.HEK293 170 bp overlap
ChIP HepG2 ENCFF388QCK 312 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 176 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 179 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 100 bp overlap