chr9 : 105,651,558 – 105,652,344
786 bp 111 TFs 1 linked gene
This 786 bp open chromatin element is linked to ENSG00000279609 and is bound by 111 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000279609 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:105,646,558 – 105,657,344
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 245 bp overlap
ASCL1 6 datasets
Motif DE_60h DE_60h-ASCL1_MA1100.3 8 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1100.3 8 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 160 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 205 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 199 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 173 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 140 bp overlap
CEBPD 1 dataset
ChIP Hep-G2 ENCSR000BQJ.CEBPD.Hep-G2 154 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 192 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 294 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 378 bp overlap
CTCF 11 datasets
ChIP D721Med ENCFF513FYD 211 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 192 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 278 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 269 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 240 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 226 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 103 bp overlap
CTCFL 2 datasets
Motif DE_60h DE_60h-CTCFL_MA1102.3 8 bp overlap
Motif DE_72h DE_72h-CTCFL_MA1102.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 170 bp overlap
ChIP BLaER1 ENCFF335XTP 197 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
E2F6 2 datasets
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
Motif DE_72h DE_72h-E2F6_MA0471.3 8 bp overlap
EBF1 5 datasets
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 156 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 270 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 134 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 2 datasets
ChIP T98G GSE112240.EZH2.T98G 279 bp overlap
ChIP neural progenitor cell ENCFF018MKA 394 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 262 bp overlap
Ebf4 4 datasets
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FIGLA 2 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 522 bp overlap
ChIP DE DE-FOXA2-2 437 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 179 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 430 bp overlap
ChIP DE DE-GATA4-2 531 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 405 bp overlap
ChIP DE DE-GATA6-2 537 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 377 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 372 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 339 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 289 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 247 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 480 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 192 bp overlap
HLF 1 dataset
Motif DE_60h DE_60h-HLF_MA0043.4 9 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 59 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
INSM1 1 dataset
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 263 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 467 bp overlap
MEF2B 1 dataset
ChIP KARPAS422 GSE69558.MEF2B.KARPAS422 313 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 199 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 261 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MYBL2 1 dataset
Motif DE_60h DE_60h-MYBL2_MA0777.1 15 bp overlap
MZF1 1 dataset
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
NANOG 5 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 386 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 226 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 186 bp overlap
ChIP hESC GSE18292.NANOG.hESC 97 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 388 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 287 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 243 bp overlap
NFIL3 1 dataset
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
NHLH1 2 datasets
Motif DE_60h DE_60h-NHLH1_MA0048.3 9 bp overlap
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NR1D1 2 datasets
Motif DE_60h DE_60h-NR1D1_MA1531.2 14 bp overlap
Motif DE_72h DE_72h-NR1D1_MA1531.2 14 bp overlap
NR1D2 2 datasets
Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap
Motif DE_72h DE_72h-NR1D2_MA1532.2 15 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_60h DE_60h-NR1H2RXRA_MA0115.1 17 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 2 datasets
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 2 datasets
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
Nrf1 2 datasets
Motif DE_60h DE_60h-Nrf1_MA0506.3 12 bp overlap
Motif DE_72h DE_72h-Nrf1_MA0506.3 12 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 395 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
POU1F1 1 dataset
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 322 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 279 bp overlap
POU5F1B 1 dataset
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 363 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 327 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 244 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 151 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 549 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 327 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 190 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 301 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 184 bp overlap
SNAI1 2 datasets
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SNAI2 2 datasets
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SNAI3 2 datasets
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 250 bp overlap
SP1 3 datasets
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_72h DE_72h-SP2_MA0516.3 9 bp overlap
SP5 4 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT1::STAT2 1 dataset
Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 291 bp overlap
TCF12 4 datasets
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 345 bp overlap
TCF3 3 datasets
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 406 bp overlap
TCF4 2 datasets
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_60h DE_60h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif DE_72h DE_72h-TFAP4ETV1_MA1966.2 13 bp overlap
THAP1 1 dataset
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
ZBTB24 2 datasets
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZBTB6 1 dataset
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 2 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZIC4 2 datasets
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF148 1 dataset
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
ZNF16 2 datasets
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 276 bp overlap
ZNF263 2 datasets
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF281 1 dataset
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 238 bp overlap
ZNF530 1 dataset
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
ZNF549 1 dataset
Motif DE_60h DE_60h-ZNF549_MA1728.2 8 bp overlap
ZNF701 4 datasets
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
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