chr1 : 15,596,692 – 15,597,111
419 bp 80 TFs 1 linked gene
This 419 bp open chromatin element is linked to ENSG00000237301 and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000237301 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:15,591,692 – 15,602,111
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ARID4A 1 dataset
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 95 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 153 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 173 bp overlap
BRD4 2 datasets
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 344 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 232 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 253 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 87 bp overlap
ChIP leiomyoma_PT967 GSE128230.CDK8.leiomyoma_PT967 79 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 340 bp overlap
CREB1 1 dataset
ChIP K562 ENCFF786DGQ 301 bp overlap
CTCF 20 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 164 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 98 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 131 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 264 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 203 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 387 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 171 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 348 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 309 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 243 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 94 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 168 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 279 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 202 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 257 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 139 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 218 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 295 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 178 bp overlap
CUX1 1 dataset
ChIP Hep-G2 ENCSR049KIZ.CUX1.Hep-G2 164 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF262VBH 251 bp overlap
ChIP BLaER1 ENCFF274GAT 251 bp overlap
ChIP BLaER1 ENCFF364PUR 175 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 147 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 328 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 146 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 233 bp overlap
FOS 1 dataset
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 96 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 419 bp overlap
ChIP DE DE-FOXA2-2 402 bp overlap
GATA2 1 dataset
ChIP K562 ENCFF088XQT 352 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 419 bp overlap
ChIP DE DE-GATA4-2 419 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 382 bp overlap
ChIP DE DE-GATA6-2 413 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 331 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 419 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 356 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 371 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 419 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 354 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 394 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 177 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 267 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 147 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 216 bp overlap
MAX 2 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF507HCX 298 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 129 bp overlap
MCM3 1 dataset
ChIP K562 ENCFF121QKD 73 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 88 bp overlap
MEF2A 4 datasets
ChIP Hep-G2 ENCSR291MJH.MEF2A.Hep-G2 226 bp overlap
ChIP HepG2 ENCFF614TXG 277 bp overlap
ChIP K-562 ENCSR000BNV.MEF2A.K-562 210 bp overlap
ChIP K562 ENCFF903PRO 168 bp overlap
MEF2D 4 datasets
ChIP HepG2 ENCFF576WDO 207 bp overlap
ChIP K-562 ENCSR647ZXA.MEF2D.K-562 254 bp overlap
ChIP K562 ENCFF392LDT 271 bp overlap
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 243 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 278 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 178 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 146 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 155 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 127 bp overlap
NKX3-1 2 datasets
ChIP islet ERP004003.NKX3-1.islet 58 bp overlap
ChIP islet ERP004003.NKX3-1.islet 197 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 122 bp overlap
PAXIP1 1 dataset
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 121 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 197 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 338 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 276 bp overlap
POLR2A 2 datasets
ChIP adrenal gland ENCFF843OBJ 127 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 197 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 419 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 394 bp overlap
PRDM10 1 dataset
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 174 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 188 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 178 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 305 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 233 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 419 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 419 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 349 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 419 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 379 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 419 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 419 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 181 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 149 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 257 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 316 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 120 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 346 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 419 bp overlap
SRF 1 dataset
ChIP HepG2 ENCFF234ZEU 319 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 140 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
VDR 2 datasets
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 419 bp overlap
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 246 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 266 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 159 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 180 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 376 bp overlap
ZBTB7A 1 dataset
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 105 bp overlap
ZFP91 1 dataset
ChIP HepG2 ENCFF012CME 202 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 312 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 419 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 293 bp overlap
ZNF217 1 dataset
ChIP Hep-G2 ENCSR055FQB.ZNF217.Hep-G2 210 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 202 bp overlap
ChIP K562 ENCFF877JCX 189 bp overlap
ZNF274 1 dataset
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 131 bp overlap
ZNF316 1 dataset
ChIP K-562 ENCSR200JYP.ZNF316.K-562 93 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 96 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 173 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 180 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 167 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 169 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 405 bp overlap
ZNF48 1 dataset
ChIP HepG2 ENCFF362CDQ 203 bp overlap
ZNF501 1 dataset
ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 206 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 248 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 138 bp overlap
ZNF770 1 dataset
ChIP HepG2 ENCFF233UVH 82 bp overlap
ZNF786 1 dataset
ChIP Hep-G2 ENCSR206BVQ.ZNF786.Hep-G2 162 bp overlap
Huangfu Lab · Publications · Resources · Contact