chr1 : 143,729,456 – 143,729,857
401 bp 101 TFs 3 linked genes
This 401 bp open chromatin element is linked to RNVU1-18, ENSG00000232721, and RNVU1-23 and is bound by 101 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RNVU1-18 at TSS At TSS Proximity
ENSG00000232721 6.1 kb Proximal Proximity
RNVU1-23 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:143,724,456 – 143,734,857
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ATF2 1 dataset
Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap
ATF3 1 dataset
Motif DE_72h DE_72h-ATF3_MA0605.3 10 bp overlap
Ahr::Arnt 3 datasets
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_72h DE_72h-AhrArnt_MA0006.2 5 bp overlap
Bach1::Mafk 1 dataset
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
CBX1 2 datasets
ChIP K562 ENCFF008KGK 63 bp overlap
ChIP K562 ENCFF008KGK 166 bp overlap
CREB1 2 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 124 bp overlap
Motif DE_72h DE_72h-CREB1_MA0018.5 8 bp overlap
CREB3L1 4 datasets
Motif DE_24h DE_24h-CREB3L1_MA0839.2 13 bp overlap
Motif DE_48h DE_48h-CREB3L1_MA0839.2 13 bp overlap
Motif DE_60h DE_60h-CREB3L1_MA0839.2 13 bp overlap
Motif DE_72h DE_72h-CREB3L1_MA0839.2 13 bp overlap
CREB3L4 1 dataset
Motif DE_72h DE_72h-CREB3L4_MA1475.2 9 bp overlap
CREM 1 dataset
Motif DE_72h DE_72h-CREM_MA0609.3 10 bp overlap
Creb5 1 dataset
Motif DE_72h DE_72h-Creb5_MA0840.2 10 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000BLI.E2F6.K-562 99 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
FIGLA 2 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
Motif DE_72h DE_72h-FOS_MA1951.2 13 bp overlap
FOS::JUN 1 dataset
Motif DE_72h DE_72h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 1 dataset
Motif DE_72h DE_72h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 1 dataset
Motif DE_72h DE_72h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUN 1 dataset
Motif DE_72h DE_72h-FOSL1JUN_MA1129.1 10 bp overlap
FOSL2::JUN 1 dataset
Motif DE_72h DE_72h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUNB 1 dataset
Motif DE_72h DE_72h-FOSL2JUNB_MA1139.2 10 bp overlap
FOSL2::JUND 1 dataset
Motif DE_72h DE_72h-FOSL2JUND_MA1145.2 10 bp overlap
GTF2B 1 dataset
ChIP K562 ENCFF716QMI 305 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 401 bp overlap
GTF2F1 2 datasets
ChIP K562 ENCFF290EKB 299 bp overlap
ChIP K562 ENCFF485ALN 215 bp overlap
JDP2 1 dataset
Motif DE_72h DE_72h-JDP2_MA0656.2 10 bp overlap
JUN 2 datasets
ChIP A549 ENCFF846DUV 324 bp overlap
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
JUN::JUNB 1 dataset
Motif DE_72h DE_72h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 1 dataset
Motif DE_72h DE_72h-JUNB_MA1140.3 11 bp overlap
JUND 2 datasets
Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 103 bp overlap
KDM4B 1 dataset
ChIP K562 ENCFF819LGW 198 bp overlap
KLF10 3 datasets
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
KLF12 3 datasets
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
Motif DE_60h DE_60h-KLF12_MA0742.2 9 bp overlap
Motif DE_72h DE_72h-KLF12_MA0742.2 9 bp overlap
KLF14 3 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF7 3 datasets
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
Motif DE_60h DE_60h-KLF7_MA1959.2 8 bp overlap
Motif DE_72h DE_72h-KLF7_MA1959.2 8 bp overlap
MAFA 1 dataset
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MED1 3 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 339 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 317 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 164 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NCOR1 1 dataset
ChIP K562 ENCFF788MPU 311 bp overlap
NFATC3 1 dataset
ChIP K562 ENCFF078EKB 173 bp overlap
NR2F1 1 dataset
Motif DE_72h DE_72h-NR2F1_MA1538.1 15 bp overlap
PAX5 1 dataset
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 125 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 146 bp overlap
PML 2 datasets
ChIP K562 ENCFF801LKH 194 bp overlap
ChIP MCF-7 ENCFF839EHA 161 bp overlap
POLR2A 27 datasets
ChIP GM12892 ENCFF245LYF 105 bp overlap
ChIP GM12892 ENCFF245LYF 342 bp overlap
ChIP GM12892 ENCFF506PGQ 164 bp overlap
ChIP GM12892 ENCFF506PGQ 380 bp overlap
ChIP GM18526 ENCFF599EPS 333 bp overlap
ChIP GM19193 ENCFF599VTO 183 bp overlap
ChIP GM19193 ENCFF599VTO 162 bp overlap
ChIP GM23338 ENCFF450WCS 176 bp overlap
ChIP HCT116 ENCFF508RDJ 117 bp overlap
ChIP HeLa-S3 ENCFF224LWS 179 bp overlap
ChIP HeLa-S3 ENCFF224LWS 229 bp overlap
ChIP HeLa-S3 ENCFF773DNG 256 bp overlap
ChIP IMR-90 ENCFF672YWV 219 bp overlap
ChIP K562 ENCFF137JSF 142 bp overlap
ChIP K562 ENCFF215CWW 293 bp overlap
ChIP K562 ENCFF262YXJ 292 bp overlap
ChIP K562 ENCFF514URW 152 bp overlap
ChIP K562 ENCFF757TUO 360 bp overlap
ChIP K562 ENCFF836GHX 251 bp overlap
ChIP MCF-7 ENCFF164XWP 302 bp overlap
ChIP MCF-7 ENCFF309IKZ 285 bp overlap
ChIP MCF-7 ENCFF411WCU 312 bp overlap
ChIP SK-N-MC ENCFF088IVG 74 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 152 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 229 bp overlap
ChIP spleen ENCFF044PYR 225 bp overlap
ChIP transverse colon ENCFF610RWV 221 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 219 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF047BLG 331 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 401 bp overlap
POU1F1 1 dataset
Motif DE_72h DE_72h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_72h DE_72h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_72h DE_72h-POU2F2_MA0507.3 13 bp overlap
POU5F1B 1 dataset
Motif DE_72h DE_72h-POU5F1B_MA0792.1 9 bp overlap
RAD21 1 dataset
ChIP K-562 ENCSR000BKV.RAD21.K-562 94 bp overlap
RBFOX2 1 dataset
ChIP K562 ENCFF967GRF 401 bp overlap
RBPJ 4 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RELA 3 datasets
Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
Motif DE_72h DE_72h-RELA_MA0107.1 10 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF061ATI 334 bp overlap
RUNX1 1 dataset
ChIP K562 ENCFF136STE 274 bp overlap
SCRT1 2 datasets
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap
Motif DE_72h DE_72h-SCRT2_MA0744.3 10 bp overlap
SIN3A 1 dataset
ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 89 bp overlap
SMAD1 1 dataset
ChIP K562 ENCFF104YGG 301 bp overlap
SMAD5 1 dataset
ChIP K562 ENCFF941FJJ 300 bp overlap
SNAI1 2 datasets
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SNAI3 2 datasets
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SNAPC5 2 datasets
ChIP K562 ENCFF999JUU 260 bp overlap
ChIP K562 ENCFF999JUU 208 bp overlap
SP1 3 datasets
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
SP2 3 datasets
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
Motif DE_60h DE_60h-SP2_MA0516.3 9 bp overlap
Motif DE_72h DE_72h-SP2_MA0516.3 9 bp overlap
SP4 3 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SUPT5H 1 dataset
ChIP K562 ENCFF902PAW 250 bp overlap
TAF7 1 dataset
ChIP K562 ENCFF461SFY 136 bp overlap
TARDBP 1 dataset
ChIP K562 ENCFF623QJS 280 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 164 bp overlap
TCF12 2 datasets
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TCF4 2 datasets
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_60h DE_60h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif DE_72h DE_72h-TFAP4ETV1_MA1966.2 13 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 401 bp overlap
YY1 2 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 102 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 102 bp overlap
ZBED4 3 datasets
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
Motif DE_60h DE_60h-ZBED4_MA2328.1 10 bp overlap
Motif DE_72h DE_72h-ZBED4_MA2328.1 10 bp overlap
ZBTB7A 1 dataset
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 95 bp overlap
ZC3H8 2 datasets
ChIP K562 ENCFF462ENR 122 bp overlap
ChIP K562 ENCFF495URH 198 bp overlap
ZEB1 3 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 130 bp overlap
ZIC1 2 datasets
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZMIZ1 1 dataset
ChIP K562 ENCFF647WJV 294 bp overlap
ZNF140 3 datasets
Motif DE_24h DE_24h-ZNF140_MA1589.2 19 bp overlap
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF143 5 datasets
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ChIP K562 ENCFF554TVF 367 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 159 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 222 bp overlap
ChIP WTC11 ENCFF249JUK 354 bp overlap
ZNF274 3 datasets
Motif DE_24h DE_24h-ZNF274_MA1592.2 12 bp overlap
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
Motif DE_72h DE_72h-ZNF274_MA1592.2 12 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 201 bp overlap
ZNF460 2 datasets
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF701 2 datasets
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZNF740 2 datasets
ChIP K562 ENCFF505NFV 401 bp overlap
ChIP K562 ENCFF913GVQ 334 bp overlap
ZNF75A 3 datasets
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap
ZNF770 2 datasets
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap
ZNF784 4 datasets
Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap
Motif DE_48h DE_48h-ZNF784_MA1717.2 8 bp overlap
Motif DE_60h DE_60h-ZNF784_MA1717.2 8 bp overlap
Motif DE_72h DE_72h-ZNF784_MA1717.2 8 bp overlap
ZNF93 3 datasets
Motif DE_60h DE_60h-ZNF93_MA1721.2 14 bp overlap
Motif DE_60h DE_60h-ZNF93_MA1721.2 14 bp overlap
Motif DE_72h DE_72h-ZNF93_MA1721.2 14 bp overlap
ZSCAN4 1 dataset
Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
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