chr6 : 151,045,533 151,045,907
374 bp 88 TFs 2 linked genes
This 374 bp open chromatin element is linked to MTHFD1L and AKAP12 and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MTHFD1L 179.0 kb Distal Multiome
AKAP12 194.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:151,040,533 – 151,050,907
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116 GSE47938.AFF4.HCT-116 310 bp overlap
ARNT 1 dataset
ChIP A-549 GSE85352.ARNT.A-549 226 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BACH1 1 dataset
ChIP K562 ENCFF419VIM 208 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 171 bp overlap
BRD4 2 datasets
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 374 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 88 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 57 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 94 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 184 bp overlap
ChIP BLaER1 ENCFF274GAT 126 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EP300 7 datasets
ChIP HeLa-S3 ENCFF089VPQ 67 bp overlap
ChIP HepG2 ENCFF354ACD 65 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 330 bp overlap
ChIP SK-N-SH ENCFF451CNG 138 bp overlap
ChIP tibial nerve ENCFF952OPK 135 bp overlap
ChIP upper lobe of left lung ENCFF024QBJ 72 bp overlap
ChIP upper lobe of left lung ENCFF306FRW 126 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 157 bp overlap
ESR1 2 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 73 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 100 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 164 bp overlap
ETV6 2 datasets
ChIP K562 ENCFF311NMS 132 bp overlap
ChIP WTC11 ENCFF812SCD 368 bp overlap
FOS 4 datasets
ChIP IMR-90 ENCFF179EDA 77 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 85 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 199 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 246 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 294 bp overlap
FOSL2 1 dataset
ChIP A549 ENCFF195CES 56 bp overlap
FOXA2 1 dataset
ChIP HepG2 ENCFF570ABM 63 bp overlap
FOXP2 2 datasets
ChIP PFSK-1 ENCFF349WGE 187 bp overlap
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 96 bp overlap
GATA2 7 datasets
ChIP ESF GSE108408.GATA2.ESF 170 bp overlap
ChIP SH-SY5Y ENCFF485YIB 374 bp overlap
ChIP SH-SY5Y ENCFF485YIB 199 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 344 bp overlap
ChIP SK-N-SH ENCFF764OZD 374 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 336 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 374 bp overlap
GATA3 2 datasets
ChIP SH-SY5Y ENCFF475HYF 374 bp overlap
ChIP SH-SY5Y ENCFF475HYF 265 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 374 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 374 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 290 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 319 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF928TKZ 144 bp overlap
HIF1A 1 dataset
ChIP HUVEC-C_HYPOX GSE39089.HIF1A.HUVEC-C_HYPOX 374 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 119 bp overlap
HOXB5 1 dataset
ChIP A549 ENCFF891VDO 93 bp overlap
IKZF1 3 datasets
ChIP K562 ENCFF348IBL 51 bp overlap
ChIP K562 ENCFF771OHZ 374 bp overlap
ChIP K562 ENCFF771OHZ 184 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 107 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 374 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 374 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 374 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 101 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 193 bp overlap
JUNB 2 datasets
ChIP A549 ENCFF251BPG 149 bp overlap
ChIP K562 ENCFF388SEP 73 bp overlap
JUND 3 datasets
ChIP K562 ENCFF336RCR 139 bp overlap
ChIP SK-N-SH ENCFF551NEQ 107 bp overlap
ChIP liver ENCFF557PGE 153 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 94 bp overlap
ChIP K562 ENCFF133OLU 156 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 65 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 259 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 93 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 108 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 52 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 82 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 59 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 374 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 124 bp overlap
ChIP SK-N-SH ENCFF965AKM 108 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 81 bp overlap
NR2F1 1 dataset
ChIP K562 ENCFF221HJH 85 bp overlap
NR2F2 1 dataset
ChIP liver ENCFF427MRU 84 bp overlap
NR3C1 1 dataset
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 175 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 57 bp overlap
PATZ1 1 dataset
ChIP SK-N-SH ENCFF650NCN 76 bp overlap
PBX1 1 dataset
ChIP A549 ENCFF475JCE 79 bp overlap
POLR2A 11 datasets
ChIP IMR-90 ENCFF672YWV 154 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 266 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 307 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 94 bp overlap
ChIP sigmoid colon ENCFF754JQR 64 bp overlap
ChIP spleen ENCFF044PYR 190 bp overlap
ChIP spleen ENCFF446ZGT 154 bp overlap
ChIP stomach ENCFF607ZPU 88 bp overlap
ChIP transverse colon ENCFF607LKE 64 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 126 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 66 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 301 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 262 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 222 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD21 4 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 79 bp overlap
ChIP IMR-90 ENCFF752PTH 76 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP liver ENCFF485PAC 60 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
RARB 1 dataset
ChIP SK-N-SH ENCFF475WOR 57 bp overlap
RELA 6 datasets
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 109 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 231 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 167 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 181 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 171 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 101 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCFF861MKH 229 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 170 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 170 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 228 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 85 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 374 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 259 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 241 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 132 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 217 bp overlap
ChIP liver ENCFF769YSM 213 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 187 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 228 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 222 bp overlap
TAF1 1 dataset
ChIP PFSK-1 ENCFF982LZL 360 bp overlap
TCF12 2 datasets
ChIP A-549 ENCSR000BQQ.TCF12.A-549 94 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 211 bp overlap
TCF7L2 1 dataset
ChIP HCT116 ENCFF038POZ 136 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 371 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCFF772OTG 301 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
ZBTB33 1 dataset
ChIP SK-N-SH ENCFF667JYU 97 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 92 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF589 2 datasets
ChIP K562 ENCFF770FHN 374 bp overlap
ChIP K562 ENCFF770FHN 340 bp overlap