chr6 : 73,697,373 73,697,554
181 bp 79 TFs 2 linked genes
This 181 bp open chromatin element is linked to CD109 and CD109-AS1 and is bound by 79 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CD109 1.2 kb Proximal Proximity
CD109-AS1 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:73,692,373 – 73,702,554
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 106 bp overlap
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 69 bp overlap
ARID1A 4 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 181 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 181 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 166 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 118 bp overlap
ARID2 1 dataset
ChIP MCF-7_parental GSE123284.ARID2.MCF-7_parental 103 bp overlap
BRD2 6 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 181 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 129 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 138 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 139 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 181 bp overlap
ChIP SUM149PT_R_JQ1 GSE131097.BRD2.SUM149PT_R_JQ1 108 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 112 bp overlap
BRD4 6 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 51 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 181 bp overlap
ChIP SUM159PT_300nMJQ1_24h GSE87418.BRD4.SUM159PT_300nMJQ1_24h 150 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 181 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 104 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 79 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 125 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 125 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 86 bp overlap
CBX8 2 datasets
ChIP K-562 ENCSR000ATW.CBX8.K-562 181 bp overlap
ChIP K562 ENCFF485TBL 181 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 146 bp overlap
CTBP1 2 datasets
ChIP MCF-7 ENCFF969VBY 157 bp overlap
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 78 bp overlap
CUX1 1 dataset
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 79 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 128 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ChIP RWPE-1 GSE114241.EHF.RWPE-1 181 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 181 bp overlap
ESR1 38 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 165 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 69 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 145 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 116 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 139 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 162 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 65 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 110 bp overlap
ChIP MCF-7_E2-1280-min-ERalpha GSE94023.ESR1.MCF-7_E2-1280-min-ERalpha 127 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 86 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 69 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 73 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 55 bp overlap
ChIP MCF-7_Fulvestrant_HC11 GSE102882.ESR1.MCF-7_Fulvestrant_HC11 129 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 108 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 166 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 156 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 142 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 155 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 53 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 65 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 74 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 148 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 67 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 156 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 135 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 149 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 168 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 122 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 153 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 146 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 132 bp overlap
ChIP MCF-7_shKMT2C_R GSE100328.ESR1.MCF-7_shKMT2C_R 77 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 96 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 93 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 113 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 164 bp overlap
ChIP breast_tumor_Male_30 GSE104399.ESR1.breast_tumor_Male_30 160 bp overlap
ETS1 4 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 177 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 166 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 83 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 181 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
EZH2 1 dataset
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 165 bp overlap
FOS 2 datasets
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 181 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 99 bp overlap
FOXA1 11 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 181 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 149 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 111 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 136 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 122 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 107 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 62 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 115 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 121 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 101 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 148 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 96 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 59 bp overlap
GATA2 7 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 80 bp overlap
ChIP HUVEC-C GSE109625.GATA2.HUVEC-C 110 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.GATA2.HUVEC-C_VEGF_1h 73 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 127 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 80 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 181 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 112 bp overlap
GATA3 11 datasets
ChIP MCF-7 ENCFF178GBS 181 bp overlap
ChIP MCF-7 ENCFF352QVM 134 bp overlap
ChIP MCF-7 ENCFF437NQS 89 bp overlap
ChIP MCF-7 ENCFF695MAU 181 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 161 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 178 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 143 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 154 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 58 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 60 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 92 bp overlap
HDAC1 2 datasets
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 181 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 169 bp overlap
HDAC2 2 datasets
ChIP MCF-7 ENCFF881POI 181 bp overlap
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 145 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 181 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 106 bp overlap
HSF1 2 datasets
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 121 bp overlap
HSF2 1 dataset
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 181 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 154 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MAF 2 datasets
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 181 bp overlap
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 181 bp overlap
MAX 2 datasets
ChIP HCT116 ENCFF810LEN 181 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 138 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 126 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 157 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 141 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 57 bp overlap
NR2F2 2 datasets
ChIP MCF-7 ENCFF329FZB 175 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 133 bp overlap
NR3C1 1 dataset
ChIP MCF-7_DEX GSE72249.NR3C1.MCF-7_DEX 76 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 123 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 77 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PGR 3 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 181 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 129 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 181 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 79 bp overlap
POLR2A 6 datasets
ChIP HCT116 ENCFF508RDJ 181 bp overlap
ChIP erythroblast ENCFF498VMR 181 bp overlap
ChIP erythroblast ENCFF498VMR 181 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 181 bp overlap
ChIP lower leg skin ENCFF058ULB 162 bp overlap
ChIP lower leg skin ENCFF058ULB 181 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 154 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 181 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 59 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 64 bp overlap
SIN3A 4 datasets
ChIP A-549 ENCSR513XQX.SIN3A.A-549 132 bp overlap
ChIP A549 ENCFF752ATT 181 bp overlap
ChIP MCF-7 ENCFF521RDC 181 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 156 bp overlap
SMARCA4 9 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 170 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 181 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 167 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 181 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 181 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 137 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 109 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 168 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 71 bp overlap
SMARCB1 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 153 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 181 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 94 bp overlap
SP1 1 dataset
ChIP HCT116 ENCFF800LBN 181 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 176 bp overlap
SPDEF 2 datasets
ChIP MCF-7 ENCFF827PZY 145 bp overlap
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 181 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 169 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 145 bp overlap
STAT3 8 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 181 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 181 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 181 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 138 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 181 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 103 bp overlap
ChIP MCF-7_jc5847 GSE126004.STAT3.MCF-7_jc5847 78 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 172 bp overlap
SUPT5H 2 datasets
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 181 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 110 bp overlap
TBP 2 datasets
ChIP HeLa-S3 ENCFF715NNJ 181 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 180 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 163 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 181 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 181 bp overlap
TLE3 1 dataset
ChIP MCF-7 GSE41561.TLE3.MCF-7 126 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 181 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 132 bp overlap
USF2 1 dataset
ChIP HeLa-S3 ENCFF765YUZ 181 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 140 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 181 bp overlap