chr6 : 13,480,581 13,481,344
763 bp 81 TFs 2 linked genes
This 763 bp open chromatin element is linked to GFOD1-AS1 and GFOD1 and is bound by 81 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
GFOD1-AS1 4.9 kb Proximal Proximity
GFOD1 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:13,475,581 – 13,486,344
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
ATF3 1 dataset
ChIP liver ENCSR480LIS.ATF3.liver 214 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 380 bp overlap
BCL11A 3 datasets
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 134 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 116 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 81 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801 204 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801_rDNA 204 bp overlap
BRD4 8 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 250 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 323 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 409 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 409 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 323 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 335 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 333 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 490 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 276 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 79 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 203 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 697 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 181 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 478 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCFF692SMY 385 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 222 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 178 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 345 bp overlap
EP300 1 dataset
ChIP A-549 ENCSR000BPW.EP300.A-549 375 bp overlap
EZH1 1 dataset
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 141 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 162 bp overlap
FOSL1 3 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 258 bp overlap
ChIP K562 ENCFF455MKD 709 bp overlap
ChIP K562 ENCFF455MKD 203 bp overlap
FOSL2 3 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 358 bp overlap
ChIP A-549 ENCSR000BQO.FOSL2.A-549 306 bp overlap
ChIP A549 ENCFF195CES 365 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 369 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 390 bp overlap
GATA1 6 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 234 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 191 bp overlap
ChIP erythroblast ENCFF867JAR 605 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 500 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 217 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 209 bp overlap
GATA2 2 datasets
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 246 bp overlap
GATA3 2 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 259 bp overlap
ChIP A549 ENCFF226FVV 421 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 456 bp overlap
ChIP DE DE-GATA4-2 437 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 195 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 270 bp overlap
GATA6 7 datasets
ChIP AGS GSE51705.GATA6.AGS 276 bp overlap
ChIP DE DE-GATA6-2 266 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 560 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 479 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 416 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 410 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 310 bp overlap
HNF4A 4 datasets
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 400 bp overlap
ChIP liver ENCFF354NRH 129 bp overlap
ChIP liver ENCFF449HPV 114 bp overlap
ChIP liver ERP002306.HNF4A.liver 143 bp overlap
HSF1 1 dataset
ChIP BT-20 GSE38901.HSF1.BT-20 152 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 182 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF616FJX 457 bp overlap
ChIP GM12878 ENCFF753XDO 215 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 368 bp overlap
IRF2 2 datasets
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 325 bp overlap
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 339 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 418 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 530 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 438 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 236 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 625 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 158 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 273 bp overlap
JUND 2 datasets
ChIP liver ENCFF007WWT 180 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 77 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 763 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 314 bp overlap
MED1 1 dataset
ChIP A-549 GSE76893.MED1.A-549 234 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 305 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 258 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 242 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BHG.NR3C1.A-549 171 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 244 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 409 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 492 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 422 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 245 bp overlap
RBPJ 3 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 358 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 96 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 467 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 108 bp overlap
RELA 6 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 214 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 211 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 341 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 198 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 138 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 284 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 296 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 147 bp overlap
SMAD2-3 6 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 285 bp overlap
ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 332 bp overlap
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 230 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 472 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 426 bp overlap
ChIP KGN_TGF GSE138496.SMAD2-3.KGN_TGF 339 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 481 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 327 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 438 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 490 bp overlap
SMAD3 5 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 588 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 701 bp overlap
ChIP HMLE_TGFb GSE104760.SMAD3.HMLE_TGFb 408 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 393 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 193 bp overlap
SMAD4 4 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 152 bp overlap
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 302 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.SMAD4.HGrC1_C134W-TGF_parental 399 bp overlap
ChIP HGrC1_WT-TGF GSE138496.SMAD4.HGrC1_WT-TGF 323 bp overlap
SMARCA4 8 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 180 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 102 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 262 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 255 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 84 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 246 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 285 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 202 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 169 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 134 bp overlap
SOX4 1 dataset
ChIP MDA-MB-231_TGFb GSE104760.SOX4.MDA-MB-231_TGFb 285 bp overlap
SP1 3 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 371 bp overlap
ChIP liver ENCFF597LFJ 72 bp overlap
ChIP liver ENCFF769YSM 281 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 277 bp overlap
STAT3 5 datasets
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 321 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 226 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 260 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 107 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 104 bp overlap
TAL1 4 datasets
ChIP CD34 GSE52924.TAL1.CD34 144 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 238 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 234 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 200 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 661 bp overlap
TCF12 2 datasets
ChIP A-549 ENCSR000BQQ.TCF12.A-549 230 bp overlap
ChIP K562 ENCFF931DJY 391 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 202 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 763 bp overlap
TEAD4 3 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 125 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 439 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 453 bp overlap
TP53 3 datasets
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 196 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 243 bp overlap
ChIP SaOS-2 GSE51268.TP53.SaOS-2 215 bp overlap
TP63 9 datasets
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 426 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 171 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 412 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 177 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 254 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 260 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 242 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 196 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 207 bp overlap
VDR 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 148 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 211 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 603 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 691 bp overlap
ZFP64 2 datasets
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 91 bp overlap
ChIP HepG2 ENCFF873EPM 101 bp overlap
ZNF256 1 dataset
ChIP HepG2 ENCFF863RQR 100 bp overlap
ZNF737 1 dataset
ChIP HepG2 ENCFF660NHX 90 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 454 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 82 bp overlap