chr5 : 154,479,905 154,480,405
500 bp 89 TFs 1 linked gene
This 500 bp open chromatin element is linked to HAND1 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HAND1 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:154,474,905 – 154,485,405
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 276 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 464 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 158 bp overlap
BRD4 8 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 371 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 358 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 500 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 304 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 415 bp overlap
ChIP hESC GSE33281.BRD4.hESC 71 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 259 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 195 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 233 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 157 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 294 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 231 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 298 bp overlap
ChIP H1 ENCFF329MAX 500 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 452 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 146 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 194 bp overlap
EP300 1 dataset
ChIP MCF-7 GSE128445.EP300.MCF-7 240 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 256 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 254 bp overlap
ESR1 4 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 207 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 181 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 304 bp overlap
ChIP NCI-H3396_E2 GSE32349.ESR1.NCI-H3396_E2 341 bp overlap
ETS1 6 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 375 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 59 bp overlap
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 220 bp overlap
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 97 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 228 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 221 bp overlap
EZH2 26 datasets
ChIP A673 ENCFF790MVL 190 bp overlap
ChIP GM12878 ENCFF635TDF 84 bp overlap
ChIP GM23338 ENCFF613YON 500 bp overlap
ChIP H1 ENCFF232NZA 500 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 294 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 500 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 500 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 285 bp overlap
ChIP K-562 ENCSR000AQE.EZH2.K-562 164 bp overlap
ChIP T98G GSE112240.EZH2.T98G 479 bp overlap
ChIP astrocyte ENCFF365JTP 500 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 93 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 500 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 354 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 351 bp overlap
ChIP fibroblast of lung ENCFF479BAW 152 bp overlap
ChIP hepatocyte ENCFF552DZB 500 bp overlap
ChIP keratinocyte ENCFF070STK 115 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 197 bp overlap
ChIP myotube ENCFF857GWB 427 bp overlap
ChIP neural cell ENCFF610EPB 337 bp overlap
ChIP neural progenitor cell ENCFF018MKA 500 bp overlap
ChIP neural progenitor cell ENCFF472NFV 500 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 225 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 201 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 410 bp overlap
FLI1 1 dataset
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 246 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 400 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 260 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 358 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 500 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 398 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 500 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 293 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 189 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 365 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 162 bp overlap
HSF1 1 dataset
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 245 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 377 bp overlap
ChIP Hep-G2 GSE107730.INO80.Hep-G2 315 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 432 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 180 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 500 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 348 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 61 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 338 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 345 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 397 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 100 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 500 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 179 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 500 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 500 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 275 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 375 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 208 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 286 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 397 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 418 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 122 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 208 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 265 bp overlap
PGR 1 dataset
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 131 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 271 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 413 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 333 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 399 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 500 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 156 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 271 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
RELA 5 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 196 bp overlap
ChIP GM18951 ENCSR000EBD.RELA.GM18951 184 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 167 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 200 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 500 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 168 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 347 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 371 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 250 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 357 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 460 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 471 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 500 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 394 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 500 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 435 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 262 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 279 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 114 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 338 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 264 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 474 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 385 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 352 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 212 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 243 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 262 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 406 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 2 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 387 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 336 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 447 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 249 bp overlap
SUZ12 8 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 409 bp overlap
ChIP H1 ENCFF507HGF 78 bp overlap
ChIP H1 ENCFF881NFR 500 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 409 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 197 bp overlap
ChIP NT2/D1 ENCFF574SXS 500 bp overlap
ChIP NT2/D1 ENCFF574SXS 225 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 500 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 138 bp overlap
TFAP2A 3 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 194 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 2 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 281 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 243 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 402 bp overlap
YY1 1 dataset
ChIP H1 ENCFF524BTL 337 bp overlap
ZBED4 2 datasets
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 303 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 398 bp overlap
ZNF202 1 dataset
ChIP HEK293T GSE78099.ZNF202.HEK293T 134 bp overlap
ZNF417 2 datasets
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
Motif DE_24h DE_24h-ZNF417_MA1727.2 7 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 255 bp overlap
ZNF454 2 datasets
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 243 bp overlap
ZNF93 2 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_24h DE_24h-ZNF93_MA1721.2 14 bp overlap