chr5 : 68,922,292 68,922,890
598 bp 63 TFs 5 linked genes
This 598 bp open chromatin element is linked to 5 target genes and is bound by 63 transcription factors.
Linked Genes
5 genes
Link type
Gene Expression Dist. to TSS Distance Link type
SLC30A5 171.4 kb Distal Multiome
CCNB1 244.6 kb Distal Multiome
CENPH 267.0 kb Distal Multiome
MRPS36 295.2 kb Distal Multiome
PIK3R1 706.8 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:68,917,292 – 68,927,890
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 435 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 565 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 420 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 187 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 260 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 270 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 267 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 286 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 144 bp overlap
BRD4 1 dataset
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 165 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 235 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 426 bp overlap
ChIP H1 ENCFF126NLU 431 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 369 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 285 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 481 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 419 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 395 bp overlap
ChIP hESC GSE17917.EP300.hESC 541 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 281 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 165 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 1 dataset
ChIP WA01 ENCSR000ASY.EZH2.WA01 268 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 146 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 575 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 251 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 512 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 187 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 263 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 501 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 598 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 598 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 598 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 550 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 406 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 237 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 117 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 598 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 497 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 186 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 598 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 598 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 598 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 550 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 598 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 598 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 598 bp overlap
ChIP hESC GSE18292.NANOG.hESC 321 bp overlap
ChIP hESC GSE20650.NANOG.hESC 285 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 598 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 292 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 523 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 375 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 464 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 429 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 330 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 208 bp overlap
ChIP GM23338 ENCFF333SNB 111 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 598 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 580 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 264 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 346 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 536 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 345 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 587 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 598 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 397 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 389 bp overlap
RAD21 2 datasets
ChIP WA09 GSE105028.RAD21.WA09 280 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 216 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 238 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 144 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 481 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 381 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 542 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 359 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 268 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 302 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 592 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 598 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 470 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 574 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 598 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 272 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 540 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 241 bp overlap
ChIP hESC GSE69479.SOX2.hESC 486 bp overlap
ChIP hESC GSE18292.SOX2.hESC 222 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 558 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 425 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 359 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
SP4 1 dataset
ChIP H1 ENCFF473YOB 529 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 193 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBP 6 datasets
ChIP hESC GSE122298.TBP.hESC 90 bp overlap
ChIP hESC GSE122298.TBP.hESC 251 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 119 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 172 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 272 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 249 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 506 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 598 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 160 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 598 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP WTC11 ENCFF114TZS 341 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 498 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 461 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 228 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 146 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 329 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 485 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 266 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 476 bp overlap
ZNF331 1 dataset
ChIP GM23338 ENCFF410NSZ 225 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 196 bp overlap
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 598 bp overlap