chr1 : 87,130,510 – 87,130,879
369 bp 75 TFs 1 linked gene
This 369 bp open chromatin element is linked to LINC01140 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01140 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:87,125,510 – 87,135,879
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K562 ENCFF492SKF 369 bp overlap
ChIP K562 ENCFF492SKF 369 bp overlap
AR 2 datasets
ChIP LNCaP GSE110655.AR.LNCaP 58 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 95 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 369 bp overlap
ChIP K562 ENCFF938UXQ 311 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 214 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 224 bp overlap
ChIP K562 ENCFF308SKS 329 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 256 bp overlap
ChIP K562 ENCFF963TXY 369 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 369 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 369 bp overlap
ChIP K562 ENCFF673OEZ 286 bp overlap
CCNT2 3 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 305 bp overlap
ChIP K562 ENCFF199GSZ 345 bp overlap
ChIP K562 ENCFF199GSZ 230 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000EHE.CEBPB.K-562 128 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 179 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 142 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 341 bp overlap
ChIP K562 ENCFF403WPG 357 bp overlap
CTCF 1 dataset
ChIP HT-1080 GSE135580.CTCF.HT-1080 368 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 251 bp overlap
DIDO1 1 dataset
ChIP K-562 ENCSR167JBG.DIDO1.K-562 149 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF688PUB 369 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 286 bp overlap
ChIP K562 ENCFF226VMS 317 bp overlap
ESR1 1 dataset
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 113 bp overlap
ESRRA 2 datasets
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 224 bp overlap
ChIP K562 ENCFF968PEP 284 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 268 bp overlap
GATA1 12 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 69 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 233 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 230 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 71 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 307 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 305 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 255 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 232 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF867JAR 369 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 369 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 243 bp overlap
GATA2 9 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 218 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 369 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 263 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 217 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP K562 ENCFF830LLA 369 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 159 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 369 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 173 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 218 bp overlap
ChIP DE DE-GATA4-1 322 bp overlap
ChIP DE DE-GATA4-2 369 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 369 bp overlap
ChIP foregut GSE117136.GATA4.foregut 369 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 369 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 349 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 369 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 113 bp overlap
ChIP DE DE-GATA6-1 328 bp overlap
ChIP DE DE-GATA6-2 357 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 369 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 283 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 168 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 347 bp overlap
ChIP foregut GSE117136.GATA6.foregut 369 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 350 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 241 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 220 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 204 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 334 bp overlap
ChIP K562 ENCFF968WBH 369 bp overlap
HMBOX1 5 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 218 bp overlap
ChIP K562 ENCFF055GAZ 369 bp overlap
ChIP K562 ENCFF055GAZ 300 bp overlap
ChIP K562 ENCFF317JJX 369 bp overlap
ChIP K562 ENCFF317JJX 294 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 369 bp overlap
ChIP K562 ENCFF348IBL 69 bp overlap
ChIP K562 ENCFF348IBL 369 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 257 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 251 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 336 bp overlap
ChIP K562 ENCFF464PIV 184 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 129 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 369 bp overlap
LEF1 1 dataset
ChIP K-562 ENCSR343ELW.LEF1.K-562 271 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 128 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 365 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR180NCY.MTA3.K-562 142 bp overlap
ChIP K-562 ENCSR914NEI.MTA3.K-562 60 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 256 bp overlap
ChIP K562 ENCFF788MPU 324 bp overlap
ChIP K562 ENCFF866HRM 369 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 96 bp overlap
NOTCH1 1 dataset
ChIP CD34 GSE63010.NOTCH1.CD34 171 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 251 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 196 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 330 bp overlap
ChIP K562 ENCFF674RQA 369 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 105 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 369 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 350 bp overlap
PRDM10 2 datasets
ChIP K-562 ENCSR120MPG.PRDM10.K-562 150 bp overlap
ChIP K562 ENCFF740YLK 82 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 295 bp overlap
REST 2 datasets
ChIP K-562 ENCSR137ZMQ.REST.K-562 369 bp overlap
ChIP K562 ENCFF688UKW 345 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR076YPO.RNF2.K-562 258 bp overlap
RUNX1_mut 1 dataset
ChIP CD34 GSE111917.RUNX1_mut.CD34 248 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 369 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 367 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 369 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 369 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 291 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 263 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 369 bp overlap
ChIP K562 ENCFF059YCJ 325 bp overlap
SPI1 3 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 103 bp overlap
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 254 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 246 bp overlap
STAT1 1 dataset
ChIP SET-2_cortistatin-A GSE100566.STAT1.SET-2_cortistatin-A 183 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 369 bp overlap
STAT5A 1 dataset
ChIP K-562 ENCSR000BRR.STAT5A.K-562 152 bp overlap
TAL1 8 datasets
ChIP K-562 GSE107726.TAL1.K-562 365 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 235 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 249 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 221 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 251 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 230 bp overlap
ChIP K562 ENCFF620GMX 358 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 317 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 305 bp overlap
ChIP K562 ENCFF931DJY 354 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 169 bp overlap
TCF7 2 datasets
ChIP K-562 ENCSR863KUB.TCF7.K-562 228 bp overlap
ChIP K562 ENCFF372PUR 331 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 127 bp overlap
TEAD1 1 dataset
ChIP K-562 ENCSR591ASD.TEAD1.K-562 167 bp overlap
TEAD4 2 datasets
ChIP K562 ENCFF673NIK 192 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 194 bp overlap
TFCP2 1 dataset
ChIP K562 ENCFF984WXL 143 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 80 bp overlap
TRIM24 1 dataset
ChIP K-562 ENCSR907MZR.TRIM24.K-562 288 bp overlap
TRIM28 1 dataset
ChIP K-562 ENCSR000BRW.TRIM28.K-562 130 bp overlap
ZBTB17 2 datasets
ChIP K562 ENCFF731UTU 81 bp overlap
ChIP K562 ENCFF731UTU 280 bp overlap
ZBTB40 2 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 57 bp overlap
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 110 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 193 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 224 bp overlap
ZNF644 2 datasets
ChIP K562 ENCFF290PDB 111 bp overlap
ChIP K562 ENCFF290PDB 369 bp overlap
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