chr4 : 115,219,405 115,219,829
424 bp 140 TFs 0 linked genes
This 424 bp open chromatin element has no linked target genes and is bound by 140 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:115,214,405 – 115,224,829
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
140 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 144 bp overlap
Arid3b 1 dataset
Motif DE_12h DE_12h-Arid3b_MA0601.2 7 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 238 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
Dmrt1 2 datasets
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
Motif ES_0h ES_0h-Dmrt1_MA1603.2 9 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 204 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 424 bp overlap
ChIP neural cell ENCFF442QNK 383 bp overlap
ChIP neural cell ENCFF442QNK 407 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 196 bp overlap
ETV6 1 dataset
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXH1 4 datasets
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap
Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Hoxa13 1 dataset
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 243 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LIN54 2 datasets
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Lhx3 2 datasets
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MAFF 2 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAX 1 dataset
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 167 bp overlap
MEF2A 2 datasets
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MEIS1 6 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 251 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
ChIP SEM GSE38339.MEIS1.SEM 199 bp overlap
MEIS2 2 datasets
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYB 4 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 273 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 309 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 366 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 226 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 148 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 321 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 292 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 390 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 355 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 311 bp overlap
ChIP hESC GSE20650.NANOG.hESC 214 bp overlap
ChIP hESC GSE18292.NANOG.hESC 123 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 233 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PDX1 5 datasets
ChIP hESC GSE58685.PDX1.hESC 144 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 301 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 277 bp overlap
ChIP islet ERP001456.PDX1.islet 115 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 410 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 331 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 246 bp overlap
PKNOX2 2 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 331 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU5F1 5 datasets
ChIP GM23338 ENCFF333SNB 216 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 280 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 166 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 376 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 191 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
REST 2 datasets
ChIP hippocampus GSE144226.REST.hippocampus 297 bp overlap
ChIP neural ENCSR000BTV.REST.neural 350 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SATB1 1 dataset
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 167 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 132 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 325 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 350 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 358 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 326 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 396 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 315 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 358 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 392 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 259 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 348 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 172 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 305 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 371 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 250 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 282 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 240 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 361 bp overlap
SOX13 2 datasets
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
Motif ES_0h ES_0h-SOX13_MA1120.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 201 bp overlap
SOX2 5 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
Motif ES_0h ES_0h-SOX2_MA0143.5 7 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 229 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 331 bp overlap
SPI1 7 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 225 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 210 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 204 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 222 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 224 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 250 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 254 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Sox3 2 datasets
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Motif ES_0h ES_0h-Sox3_MA0514.3 7 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 328 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 194 bp overlap
TGIF1 2 datasets
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 2 datasets
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 2 datasets
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
USF1 1 dataset
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZKSCAN1 2 datasets
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN1_MA1585.2 9 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 333 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF75A 2 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Zic2 3 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap