chr1 : 77,514,833 77,515,366
533 bp 81 TFs 0 linked genes
This 533 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:77,509,833 – 77,520,366
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 169 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 181 bp overlap
ChIP 12Z GSE129781.ARID1A.12Z 242 bp overlap
ARID2 2 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 342 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 325 bp overlap
ARNTL 3 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 137 bp overlap
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 209 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 137 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 344 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 329 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 252 bp overlap
BRD4 15 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 471 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 290 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 179 bp overlap
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 150 bp overlap
ChIP HUVEC-C_modETS1 GSE93030.BRD4.HUVEC-C_modETS1 232 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 75 bp overlap
ChIP Hs-352-Sk GSE83725.BRD4.Hs-352-Sk 346 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 428 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 192 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 467 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 253 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 166 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 353 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 86 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 264 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 324 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 208 bp overlap
CHD4 2 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 431 bp overlap
ChIP RH5 GSE155861.CHD4.RH5 403 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 62 bp overlap
ChIP H1 ENCFF126NLU 267 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 260 bp overlap
CTCF 9 datasets
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 141 bp overlap
ChIP Panc1 ENCFF056JQX 105 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 276 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 252 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 64 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 77 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 86 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 244 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 75 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 415 bp overlap
DPF2 4 datasets
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 495 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 533 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 438 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 533 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 212 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 79 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 101 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 256 bp overlap
FLI1 5 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 60 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 180 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 72 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 370 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 336 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 86 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 317 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 107 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 533 bp overlap
FOXL2 4 datasets
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 174 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 277 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 50 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 330 bp overlap
GATA2 2 datasets
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 85 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 177 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 285 bp overlap
GPS2 1 dataset
ChIP hMADS_D0_E GSE152517.GPS2.hMADS_D0_E 96 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 412 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 320 bp overlap
HIF1A 3 datasets
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 200 bp overlap
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 343 bp overlap
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 226 bp overlap
HMGB1 1 dataset
ChIP IMR-90 GSE98245.HMGB1.IMR-90 303 bp overlap
HMGB2 2 datasets
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 317 bp overlap
ChIP IMR-90_proliferating GSE98245.HMGB2.IMR-90_proliferating 305 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 66 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 199 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 175 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 230 bp overlap
KMT2C 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 449 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 533 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4-T910M 446 bp overlap
KMT2D 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 238 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 533 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 533 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 83 bp overlap
MED1 4 datasets
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 293 bp overlap
ChIP RH4 GSE83726.MED1.RH4 277 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 246 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 154 bp overlap
MRTFA 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFA.A-673-clone-Asp114 169 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 314 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 374 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 190 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 412 bp overlap
MYOD1 5 datasets
ChIP RD GSE137168.MYOD1.RD 280 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 256 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 533 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 231 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 261 bp overlap
MYOG 3 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 91 bp overlap
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 260 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 533 bp overlap
NANOG 2 datasets
ChIP WA09 GSE105028.NANOG.WA09 344 bp overlap
ChIP hESC GSE18292.NANOG.hESC 233 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 134 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 53 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 186 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 89 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 81 bp overlap
OLIG2 4 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 407 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 533 bp overlap
ChIP brain-prefrontal-cortex_2017025 GSE129039.OLIG2.brain-prefrontal-cortex_2017025 56 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 374 bp overlap
PATZ1 1 dataset
ChIP SK-N-SH ENCFF650NCN 106 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 95 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 166 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 135 bp overlap
RBBP4 3 datasets
ChIP RH5 GSE155861.RBBP4.RH5 139 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 159 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 254 bp overlap
RUNX1 2 datasets
ChIP CD34_FETAL GSE70660.RUNX1.CD34_FETAL 63 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 78 bp overlap
RUVBL2 3 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 359 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 533 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 369 bp overlap
RXRA 3 datasets
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 317 bp overlap
ChIP JMSU-1_RXRA-S427F GSE107734.RXRA.JMSU-1_RXRA-S427F 115 bp overlap
ChIP JMSU-1_RXRA-S427F GSE107734.RXRA.JMSU-1_RXRA-S427F 284 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 144 bp overlap
SMARCA2 4 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 468 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 297 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 533 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 478 bp overlap
SMARCA4 10 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 533 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 533 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 533 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 182 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 103 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 225 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 338 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 302 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 533 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 182 bp overlap
SMARCB1 2 datasets
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 223 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 258 bp overlap
SMARCC1 5 datasets
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 294 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 464 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 377 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 53 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 146 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 99 bp overlap
SNAI2 2 datasets
ChIP RD GSE137168.SNAI2.RD 208 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 94 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 286 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 525 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 514 bp overlap
STAT3 1 dataset
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 183 bp overlap
SUPT5H 1 dataset
ChIP HeLa GSE125534.SUPT5H.HeLa 273 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 95 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 207 bp overlap
TBP 1 dataset
ChIP hESC_8h GSE122298.TBP.hESC_8h 255 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 50 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 229 bp overlap
TEAD4 3 datasets
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 94 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 195 bp overlap
ChIP SK-N-SH ENCFF754TJT 63 bp overlap
TWIST1 5 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 282 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 128 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 209 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 282 bp overlap
ChIP SHEP-21N_DOX_24H GSE80151.TWIST1.SHEP-21N_DOX_24H 134 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 189 bp overlap
YAP1 1 dataset
ChIP WA01 GSE99202.YAP1.WA01 199 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 304 bp overlap
ZNF816 1 dataset
ChIP HEK293 GSE76494.ZNF816.HEK293 124 bp overlap