chr3 : 118,808,559 – 118,809,118
559 bp 118 TFs 1 linked gene
This 559 bp open chromatin element is linked to ENSG00000243276 and is bound by 118 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000243276 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:118,803,559 – 118,814,118
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
Atf3 2 datasets
Motif DE_36h DE_36h-Atf3_MA1988.2 7 bp overlap
Motif DE_48h DE_48h-Atf3_MA1988.2 7 bp overlap
BACH1 2 datasets
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
Motif DE_48h DE_48h-BACH1_MA1633.2 9 bp overlap
BATF 2 datasets
Motif DE_36h DE_36h-BATF_MA1634.2 7 bp overlap
Motif DE_48h DE_48h-BATF_MA1634.2 7 bp overlap
BATF3 2 datasets
Motif DE_36h DE_36h-BATF3_MA0835.3 7 bp overlap
Motif DE_48h DE_48h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 2 datasets
Motif DE_36h DE_36h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_48h DE_48h-BATFJUN_MA0462.3 7 bp overlap
BNC2 2 datasets
Motif DE_36h DE_36h-BNC2_MA1928.2 7 bp overlap
Motif DE_48h DE_48h-BNC2_MA1928.2 7 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 494 bp overlap
CTCF 7 datasets
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 154 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 154 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 102 bp overlap
ChIP endodermal cell ENCFF471YCZ 390 bp overlap
Ddit3::Cebpa 1 dataset
Motif DE_36h DE_36h-Ddit3Cebpa_MA0019.2 10 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 272 bp overlap
ChIP GM12878 ENCFF167CZS 321 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 296 bp overlap
ERF 1 dataset
Motif DE_36h DE_36h-ERF_MA0760.2 9 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 275 bp overlap
ETS1 1 dataset
Motif DE_36h DE_36h-ETS1_MA0098.4 9 bp overlap
ETS2 1 dataset
Motif DE_36h DE_36h-ETS2_MA1484.2 9 bp overlap
ETV1 1 dataset
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif DE_36h DE_36h-ETV2_MA0762.2 9 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXO1 3 datasets
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_72h DE_72h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
Erg 1 dataset
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap
FOS 2 datasets
Motif DE_36h DE_36h-FOS_MA0476.2 8 bp overlap
Motif DE_48h DE_48h-FOS_MA0476.2 8 bp overlap
FOSL1 2 datasets
Motif DE_36h DE_36h-FOSL1_MA0477.3 9 bp overlap
Motif DE_48h DE_48h-FOSL1_MA0477.3 9 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 267 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 344 bp overlap
FOXH1 3 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_48h DE_48h-FOXO1ELF1_MA1953.2 13 bp overlap
GABPA 1 dataset
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 351 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 328 bp overlap
ChIP DE DE-GATA4-2 419 bp overlap
ChIP foregut GSE117136.GATA4.foregut 287 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 352 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 287 bp overlap
ChIP DE DE-GATA6-2 374 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 315 bp overlap
ChIP foregut GSE117136.GATA6.foregut 340 bp overlap
GRHL2 1 dataset
ChIP PEO1 GSE71018.GRHL2.PEO1 245 bp overlap
GTF2B 1 dataset
ChIP IMR-90_TERT GSE38303.GTF2B.IMR-90_TERT 278 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 160 bp overlap
HDGF 1 dataset
ChIP GM12878 ENCFF653WYI 388 bp overlap
Hnf1A 2 datasets
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
IRF3 2 datasets
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Irf1 2 datasets
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
Jun 2 datasets
Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap
Motif DE_48h DE_48h-Jun_MA0489.3 8 bp overlap
KLF1 2 datasets
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
KLF10 4 datasets
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
Motif DE_48h DE_48h-KLF11_MA1512.2 10 bp overlap
KLF12 2 datasets
Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap
Motif DE_48h DE_48h-KLF12_MA0742.2 9 bp overlap
KLF14 4 datasets
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
KLF15 2 datasets
Motif DE_36h DE_36h-KLF15_MA1513.2 8 bp overlap
Motif DE_48h DE_48h-KLF15_MA1513.2 8 bp overlap
KLF16 2 datasets
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 154 bp overlap
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
KLF7 2 datasets
Motif DE_36h DE_36h-KLF7_MA1959.2 8 bp overlap
Motif DE_48h DE_48h-KLF7_MA1959.2 8 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 266 bp overlap
MEIS1 6 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NKX2-4 3 datasets
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 3 datasets
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
Nfatc2 1 dataset
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
Nkx2-1 3 datasets
Motif DE_36h DE_36h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_48h DE_48h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap
PATZ1 2 datasets
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
PAX5 4 datasets
ChIP GM12878 ENCFF482PUW 251 bp overlap
ChIP GM12878 ENCFF503GOV 305 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 214 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 193 bp overlap
PBX3 2 datasets
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 200 bp overlap
PKNOX2 3 datasets
Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 2 datasets
ChIP GM12878 ENCFF263VRI 409 bp overlap
ChIP GM12878 ENCFF263VRI 194 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 264 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 156 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 237 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 284 bp overlap
SMARCA4 2 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 338 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 501 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 213 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 161 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 110 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX12 2 datasets
Motif DE_48h DE_48h-SOX12_MA1561.2 10 bp overlap
Motif DE_72h DE_72h-SOX12_MA1561.2 10 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 267 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 454 bp overlap
SOX2 1 dataset
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 217 bp overlap
SOX4 2 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap
SP2 2 datasets
Motif DE_36h DE_36h-SP2_MA0516.3 9 bp overlap
Motif DE_48h DE_48h-SP2_MA0516.3 9 bp overlap
SP3 4 datasets
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
SP9 2 datasets
Motif DE_36h DE_36h-SP9_MA1564.2 10 bp overlap
Motif DE_48h DE_48h-SP9_MA1564.2 10 bp overlap
SSRP1 1 dataset
ChIP HT-1080_AclacinomycinA GSE107595.SSRP1.HT-1080_AclacinomycinA 474 bp overlap
Sox11 2 datasets
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Sox6 2 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Stat2 2 datasets
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
TAF1 2 datasets
ChIP GM12878 ENCFF746UKX 331 bp overlap
ChIP GM12878 ENCFF746UKX 184 bp overlap
TBX2 3 datasets
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 299 bp overlap
TBX3 3 datasets
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TCF7L2 2 datasets
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 4 datasets
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 188 bp overlap
TEAD2 3 datasets
Motif DE_36h DE_36h-TEAD2_MA1121.2 7 bp overlap
Motif DE_48h DE_48h-TEAD2_MA1121.2 7 bp overlap
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD3 3 datasets
Motif DE_36h DE_36h-TEAD3_MA0808.1 8 bp overlap
Motif DE_48h DE_48h-TEAD3_MA0808.1 8 bp overlap
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 3 datasets
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TGIF1 3 datasets
Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 3 datasets
Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 3 datasets
Motif DE_36h DE_36h-TGIF2LX_MA1571.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2LX_MA1571.1 12 bp overlap
Motif DE_72h DE_72h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 3 datasets
Motif DE_36h DE_36h-TGIF2LY_MA1572.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2LY_MA1572.1 12 bp overlap
Motif DE_72h DE_72h-TGIF2LY_MA1572.1 12 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 199 bp overlap
ZBED4 2 datasets
Motif DE_36h DE_36h-ZBED4_MA2328.1 10 bp overlap
Motif DE_48h DE_48h-ZBED4_MA2328.1 10 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 173 bp overlap
ZNF148 2 datasets
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
ZNF157 2 datasets
Motif DE_36h DE_36h-ZNF157_MA2331.1 21 bp overlap
Motif DE_48h DE_48h-ZNF157_MA2331.1 21 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF189 2 datasets
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap
ZNF207 1 dataset
ChIP GM12878 ENCSR117KWH.ZNF207.GM12878 117 bp overlap
ZNF354A 1 dataset
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF684 2 datasets
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
ZNF768 1 dataset
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
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