chr1 : 61,268,349 61,269,106
757 bp 84 TFs 0 linked genes
This 757 bp open chromatin element has no linked target genes and is bound by 84 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:61,263,349 – 61,274,106
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 24 datasets
ChIP LNCaP ERP003503.AR.LNCaP 135 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 129 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 225 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 320 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 295 bp overlap
ChIP LNCaP_DHT GSE83860.AR.LNCaP_DHT 145 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 97 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 129 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 155 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 248 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 327 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 171 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 163 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 259 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 159 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 277 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 151 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 233 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 96 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 364 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 111 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 250 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 113 bp overlap
ChIP prostate-cancer_shRenilla GSE120680.AR.prostate-cancer_shRenilla 211 bp overlap
ARID2 1 dataset
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 361 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 470 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 349 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 148 bp overlap
BRD4 10 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 282 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 187 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 590 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 511 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 587 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 293 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 575 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 410 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 439 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 176 bp overlap
CTCF 38 datasets
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 131 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 299 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 328 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 261 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 273 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF255MAF 322 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 305 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 272 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 71 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 171 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 290 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 327 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 128 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 309 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 246 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 251 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 284 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF394MUG 239 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 346 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 274 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 306 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF478RRB 243 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 257 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF514PNC 244 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 299 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 296 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF641PIN 292 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 267 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 315 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 287 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 113 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 274 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 344 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 321 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF851XUX 293 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF851XUX 94 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 356 bp overlap
DDX5 1 dataset
ChIP BT-549 GSE112961.DDX5.BT-549 170 bp overlap
DPF2 2 datasets
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 307 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 185 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 297 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 140 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 197 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 198 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 172 bp overlap
FOXA1 14 datasets
ChIP HepG2 ENCFF207NVJ 168 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 155 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 103 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 141 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 238 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 159 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 280 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 273 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 584 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 355 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 283 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 304 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 251 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 706 bp overlap
ChIP DE DE-FOXA2-2 721 bp overlap
ChIP HepG2 ENCFF533COJ 189 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 361 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 189 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 225 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 329 bp overlap
ChIP HepG2 ENCFF462ULY 311 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 196 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 144 bp overlap
GATA3 3 datasets
ChIP BE2C GSE65664.GATA3.BE2C 211 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 287 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 218 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 746 bp overlap
ChIP DE DE-GATA4-2 757 bp overlap
ChIP foregut GSE117136.GATA4.foregut 319 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 486 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 337 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 683 bp overlap
ChIP DE DE-GATA6-2 757 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 704 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 590 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 609 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 564 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 638 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 757 bp overlap
ChIP foregut GSE117136.GATA6.foregut 509 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 334 bp overlap
HAND2 3 datasets
ChIP Kelly GSE94822.HAND2.Kelly 118 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 143 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 402 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 139 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 139 bp overlap
HNRNPK 5 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 540 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 547 bp overlap
ChIP HepG2 ENCFF493GNS 219 bp overlap
ChIP HepG2 ENCFF493GNS 426 bp overlap
ChIP HepG2 ENCFF826MXP 216 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 375 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 238 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 261 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 333 bp overlap
MAX 2 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 186 bp overlap
ChIP HepG2 ENCFF507HCX 461 bp overlap
MITF 2 datasets
ChIP 501-mel GSE61965.MITF.501-mel 196 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 309 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 156 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 488 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 524 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 504 bp overlap
NFIC 2 datasets
ChIP Hep-G2 ENCSR000BQX.NFIC.Hep-G2 142 bp overlap
ChIP HepG2 ENCFF169TKU 358 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 249 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 196 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 323 bp overlap
ChIP HepG2 ENCFF243FIR 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 395 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 201 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 267 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 511 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 365 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 156 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 149 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 230 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 183 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 189 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 241 bp overlap
RXRB 1 dataset
ChIP HepG2 ENCFF539ZAY 350 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 415 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 454 bp overlap
SIX1 2 datasets
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 125 bp overlap
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 125 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 384 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 451 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 330 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 122 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 127 bp overlap
SMARCA4 10 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 283 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 399 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 205 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 225 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 361 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 254 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 401 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 253 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 200 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 212 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 207 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 168 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 193 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 263 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 520 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 314 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 376 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap
SP5 2 datasets
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 191 bp overlap
ChIP HepG2 ENCFF931FHV 322 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 398 bp overlap
TBX2 2 datasets
ChIP HepG2 ENCFF811TLA 443 bp overlap
ChIP Kelly GSE94822.TBX2.Kelly 166 bp overlap
TCF7L2 1 dataset
ChIP HepG2 ENCFF510OLG 345 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 534 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 534 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 172 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 152 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 120 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 377 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 215 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 191 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 170 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 255 bp overlap
ZNF263 4 datasets
ChIP HEK293 ENCFF336CWQ 501 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 169 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 400 bp overlap
ChIP HepG2 ENCFF626SSV 201 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 109 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 370 bp overlap
ZNF677 2 datasets
ChIP HEK293 ENCFF220HCQ 53 bp overlap
ChIP HEK293 ENCSR279KDC.ZNF677.HEK293 128 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 294 bp overlap