chr3 : 64,674,660 64,674,987
327 bp 89 TFs 0 linked genes
This 327 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:64,669,660 – 64,679,987
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 157 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 327 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 327 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 327 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 327 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 240 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 327 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 228 bp overlap
BRD4 7 datasets
ChIP BE2C GSE80151.BRD4.BE2C 292 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 327 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 327 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 327 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 327 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 292 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 327 bp overlap
CBX1 2 datasets
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 84 bp overlap
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 168 bp overlap
CDK8 2 datasets
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 245 bp overlap
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 58 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 327 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 327 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 327 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH ENCFF868MXA 208 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 135 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 327 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 327 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 149 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF451CNG 327 bp overlap
ChIP SK-N-SH ENCFF829RWA 285 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 327 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 327 bp overlap
ESR1 3 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 144 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 233 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 199 bp overlap
ETS1 1 dataset
ChIP 786-O GSE86092.ETS1.786-O 116 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCFF348ABN 327 bp overlap
EWSR1 2 datasets
ChIP K-562 ENCSR142YYA.EWSR1.K-562 93 bp overlap
ChIP K-562 ENCSR142YYA.EWSR1.K-562 131 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 192 bp overlap
FOSL2 3 datasets
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 327 bp overlap
ChIP SK-N-SH ENCFF127ZDW 169 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 111 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 296 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 202 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 196 bp overlap
FOXA2 2 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 119 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 327 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 327 bp overlap
ChIP SK-N-SH ENCFF124KVL 166 bp overlap
GATA1 1 dataset
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 148 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 197 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 327 bp overlap
ChIP SK-N-SH ENCFF764OZD 324 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 327 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 154 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 183 bp overlap
GATA3 10 datasets
ChIP BE2C GSE65664.GATA3.BE2C 232 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 255 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 327 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 296 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 170 bp overlap
ChIP SH-SY5Y ENCFF475HYF 327 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 327 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 216 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 258 bp overlap
ChIP SK-N-SH ENCFF040SSB 231 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 260 bp overlap
ChIP foregut GSE117136.GATA4.foregut 327 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 327 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 327 bp overlap
GATA6 13 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 327 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 327 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 327 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 291 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 327 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 327 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 175 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 263 bp overlap
ChIP foregut GSE117136.GATA6.foregut 297 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 327 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 294 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 327 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 284 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 157 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 177 bp overlap
GRHL2 1 dataset
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 142 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 327 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 276 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 327 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 243 bp overlap
HNF1A 3 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 327 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 95 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 171 bp overlap
HNF1B 4 datasets
ChIP H9 ERP004206.HNF1B.H9 327 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 327 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 327 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 327 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 327 bp overlap
ChIP SK-N-SH ENCFF285GEQ 147 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 100 bp overlap
JUN 6 datasets
ChIP 786-O GSE86092.JUN.786-O 193 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 125 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 243 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 222 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 278 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 305 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 266 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCFF971JKN 241 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 327 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 124 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 282 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 309 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 230 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 158 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 327 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 151 bp overlap
MYB 1 dataset
ChIP THP-1 GSE90769.MYB.THP-1 72 bp overlap
MYCN 6 datasets
ChIP Kelly GSE94822.MYCN.Kelly 327 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 327 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 152 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 327 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 259 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 304 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 97 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 165 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 327 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 118 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 255 bp overlap
PDX1 4 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 327 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 267 bp overlap
ChIP islet ERP001456.PDX1.islet 153 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 302 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 327 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 327 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 327 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 179 bp overlap
PPARA 1 dataset
ChIP SK-N-SH ENCFF446HWC 202 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 152 bp overlap
RARA 2 datasets
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 291 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 252 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 181 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 327 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 191 bp overlap
REST 3 datasets
ChIP SK-N-SH ENCFF635KBN 121 bp overlap
ChIP SK-N-SH ENCFF861MKH 168 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 142 bp overlap
RFX1 1 dataset
ChIP K-562 ENCSR968GIB.RFX1.K-562 243 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 185 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCFF931NFD 135 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 179 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 327 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 327 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 327 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 327 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 327 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 325 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 327 bp overlap
SMARCA4 2 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 106 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 88 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 201 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 270 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 327 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 327 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 327 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 148 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 327 bp overlap
ChIP SK-N-SH ENCFF270OWF 282 bp overlap
TEAD4 9 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 58 bp overlap
ChIP BE2C GSE84389.TEAD4.BE2C 327 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 154 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 69 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 88 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 327 bp overlap
ChIP SK-N-SH ENCFF754TJT 249 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 244 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 159 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 263 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 327 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 207 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 233 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 88 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 211 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 327 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 327 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 327 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 327 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 254 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 315 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 255 bp overlap
ZNF565 1 dataset
ChIP SK-N-SH ENCFF372UGG 208 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 236 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 239 bp overlap