chr3 : 58,581,024 58,581,319
295 bp 84 TFs 1 linked gene
This 295 bp open chromatin element is linked to FAM107A and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
FAM107A 5.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:58,576,024 – 58,586,319
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 52 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 269 bp overlap
ATF4 1 dataset
ChIP HepG2 ENCFF903ADR 201 bp overlap
BRD4 3 datasets
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 113 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 213 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 138 bp overlap
CEBPA 3 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 125 bp overlap
ChIP HepG2 ENCFF175DFS 102 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 201 bp overlap
CEBPB 12 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 93 bp overlap
ChIP H1 ENCFF871PTR 165 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 121 bp overlap
ChIP HeLa-S3 ENCFF722WEG 141 bp overlap
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 101 bp overlap
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 86 bp overlap
ChIP HepG2 ENCFF074JWB 101 bp overlap
ChIP HepG2 ENCFF536NTI 120 bp overlap
ChIP Ishikawa ENCFF010USJ 130 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 56 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 85 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 134 bp overlap
CEBPD 2 datasets
ChIP Hep-G2 ENCSR000BQJ.CEBPD.Hep-G2 62 bp overlap
ChIP HepG2 ENCFF345JDB 161 bp overlap
CEBPG 1 dataset
ChIP HepG2 ENCFF503XBC 76 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 295 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 295 bp overlap
CREM 2 datasets
ChIP HepG2 ENCFF049UDY 199 bp overlap
ChIP HepG2 ENCFF049UDY 295 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 253 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 278 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 251 bp overlap
EP300 3 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 52 bp overlap
ChIP HepG2 ENCFF354ACD 147 bp overlap
ChIP tibial nerve ENCFF346AYA 154 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 78 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 295 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF472NFV 295 bp overlap
FOXA1 20 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 67 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 59 bp overlap
ChIP HepG2 ENCFF207NVJ 89 bp overlap
ChIP HepG2 ENCFF361KNY 127 bp overlap
ChIP HepG2 ENCFF740VZW 88 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 164 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 92 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 65 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 60 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 91 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 130 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 114 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 168 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 119 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 128 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 91 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 131 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 161 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 180 bp overlap
ChIP liver ERP002306.FOXA1.liver 73 bp overlap
FOXA2 9 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 77 bp overlap
ChIP HepG2 ENCFF533COJ 68 bp overlap
ChIP HepG2 ENCFF570ABM 101 bp overlap
ChIP liver ENCFF877SFI 135 bp overlap
ChIP liver ENCFF888VJF 156 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 136 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 64 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 98 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 148 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 65 bp overlap
FOXK1 2 datasets
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 99 bp overlap
ChIP HepG2 ENCFF635XWY 189 bp overlap
FOXP1 2 datasets
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 99 bp overlap
ChIP HepG2 ENCFF823ERM 148 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 59 bp overlap
ChIP HepG2 ENCFF462ULY 183 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 188 bp overlap
GATA4 2 datasets
ChIP foregut GSE117136.GATA4.foregut 73 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 237 bp overlap
GATA6 6 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 95 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 237 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 125 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 134 bp overlap
ChIP foregut GSE117136.GATA6.foregut 77 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 92 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 78 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 177 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 295 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 295 bp overlap
ChIP HepG2 ENCFF087XCR 122 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 227 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF854JLR 78 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 228 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 167 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 214 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 295 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 232 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 267 bp overlap
KLF16 1 dataset
ChIP HepG2 ENCFF969FFI 289 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 66 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 117 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 227 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 65 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 70 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 184 bp overlap
MIER3 1 dataset
ChIP HepG2 ENCFF032KTL 230 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 185 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 55 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 171 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 193 bp overlap
NFIL3 2 datasets
ChIP Hep-G2 GSE97661.NFIL3.Hep-G2 132 bp overlap
ChIP HepG2 ENCFF686VLI 130 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 230 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 121 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 271 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 55 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 174 bp overlap
REST 2 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 204 bp overlap
ChIP neural ENCSR000BTV.REST.neural 226 bp overlap
RFX1 3 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 99 bp overlap
ChIP K562 ENCFF809XVG 85 bp overlap
ChIP MCF-7 ENCFF782EZS 70 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 276 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 201 bp overlap
SMAD3 2 datasets
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 63 bp overlap
ChIP HepG2 ENCFF309PKF 184 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 242 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 76 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 295 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 295 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 295 bp overlap
SOX2 3 datasets
ChIP hiPSC GSE56567.SOX2.hiPSC 97 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 250 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 284 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 243 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 182 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF767OCK 268 bp overlap
SP1 3 datasets
ChIP HEK293 GSE76494.SP1.HEK293 143 bp overlap
ChIP WTC11 ENCFF688PEU 295 bp overlap
ChIP WTC11 ENCFF688PEU 62 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 117 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 96 bp overlap
TEF 1 dataset
ChIP HepG2 ENCFF661AUQ 168 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 132 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 239 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 295 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 50 bp overlap
THAP11 1 dataset
ChIP HepG2 ENCFF272SWH 241 bp overlap
ZFP64 2 datasets
ChIP HEK293 GSE76494.ZFP64.HEK293 209 bp overlap
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 259 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 149 bp overlap
ZIC5 1 dataset
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 225 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 192 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 295 bp overlap