chr3 : 18,330,590 18,331,299
709 bp 101 TFs 0 linked genes
This 709 bp open chromatin element has no linked target genes and is bound by 101 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:18,325,590 – 18,336,299
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 133 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 468 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 88 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD2.SUM159PT_DMSO 125 bp overlap
BRD4 3 datasets
ChIP HCC1937 GSE124748.BRD4.HCC1937 175 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 99 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 192 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP RWPE2 ENCFF911IEE 501 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 212 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCFF528YED 385 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 6 datasets
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 64 bp overlap
ChIP MCF-7 ENCFF465LTH 292 bp overlap
ChIP MCF-7 ENCFF465LTH 391 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 203 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 85 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 300 bp overlap
ChIP DE DE-FOXA2-2 295 bp overlap
ChIP HepG2 ENCFF570ABM 305 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF781VSC 341 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF352QVM 481 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCFF446EIF 479 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCFF252CFL 441 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 396 bp overlap
IKZF3 3 datasets
ChIP HEK293 ENCFF518OXG 267 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 178 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 79 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 123 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 437 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 201 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCFF658MHR 425 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
ChIP HEK293 ENCFF599UKL 371 bp overlap
KLF9 1 dataset
ChIP HEK293 ENCFF588INF 451 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCFF179YRV 297 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
ChIP MCF-7 ENCFF116OCS 411 bp overlap
PKNOX2 1 dataset
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 2 datasets
ChIP transverse colon ENCFF610RWV 425 bp overlap
ChIP vagina ENCFF384GAB 631 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 349 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 169 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 525 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 381 bp overlap
RUVBL2 1 dataset
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 394 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 192 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 184 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 431 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
ChIP HEK293 ENCFF087XLA 557 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 139 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SUPT5H 1 dataset
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 202 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TGIF1 1 dataset
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 178 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 197 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 184 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 174 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 173 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
VDR 3 datasets
ChIP LS180_125 GSE31939.VDR.LS180_125 368 bp overlap
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 223 bp overlap
ChIP primary-prostate-epithelial-cell GSE124576.VDR.primary-prostate-epithelial-cell 456 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 425 bp overlap
ChIP HEK293 ENCFF906HIR 371 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 6 datasets
ChIP HEK293 ENCFF734SBY 391 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 505 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 521 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 169 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 95 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 66 bp overlap
YY2 2 datasets
Motif DE_12h DE_12h-YY2_MA0748.3 7 bp overlap
ChIP HEK293 ENCFF997QEP 397 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 473 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 467 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 201 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 306 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 571 bp overlap
ChIP HEK293 ENCFF303WRD 420 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 551 bp overlap
ChIP HEK293 ENCFF847JIE 466 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 467 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCFF942LFP 231 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 501 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF379OSU 501 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ChIP HepG2 ENCFF585QNU 325 bp overlap
ChIP K562 ENCFF594VNM 471 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 506 bp overlap
ChIP HEK293 ENCFF784SLD 506 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 392 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 304 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 486 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 83 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCFF799ATK 473 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCFF236OPX 497 bp overlap
ZNF444 1 dataset
ChIP MCF-7 ENCFF602QFR 461 bp overlap
ZNF501 1 dataset
ChIP HEK293 ENCFF066RAQ 505 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF626 1 dataset
ChIP HEK293 ENCFF633URH 321 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCFF040AZE 229 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF777 1 dataset
ChIP HepG2 ENCFF362XDA 641 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCFF082YBI 337 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 525 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap