chr1 : 50,424,918 50,425,562
644 bp 78 TFs 2 linked genes
This 644 bp open chromatin element is linked to ENSG00000284700 and DMRTA2 and is bound by 78 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000284700 1.3 kb Proximal Proximity
DMRTA2 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,419,918 – 50,430,562
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 220 bp overlap
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 190 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 199 bp overlap
AR 2 datasets
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 388 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 69 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 574 bp overlap
ATF1 1 dataset
ChIP HCT-116 GSE130477.ATF1.HCT-116 149 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 644 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 219 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 500 bp overlap
ChIP RKO GSE47190.BRD1.RKO 171 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 121 bp overlap
BRD4 8 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 210 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 187 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 246 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 409 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 611 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 305 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 249 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 131 bp overlap
CBFA2T2 2 datasets
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 242 bp overlap
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 263 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 196 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 365 bp overlap
CBX8 5 datasets
ChIP A549 ENCFF656LMW 152 bp overlap
ChIP A549 ENCFF656LMW 364 bp overlap
ChIP H1 ENCFF095JHA 70 bp overlap
ChIP H1 ENCFF095JHA 396 bp overlap
ChIP K562 ENCFF485TBL 470 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 124 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 224 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 259 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 486 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 636 bp overlap
CTCF 16 datasets
ChIP AG04450 ENCFF116DJL 227 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 206 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 68 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 144 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 152 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 360 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 111 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 127 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 144 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 539 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 269 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 644 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 100 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 220 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 82 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 179 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCFF432UGA 365 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 203 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 379 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 83 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 154 bp overlap
ESR1 14 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 183 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 241 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 257 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 395 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 230 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 152 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 240 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 261 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 227 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 345 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 448 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 268 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 269 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 201 bp overlap
EZH2 25 datasets
ChIP A673 ENCFF790MVL 429 bp overlap
ChIP A673 ENCFF790MVL 598 bp overlap
ChIP A673 ENCFF955JRZ 429 bp overlap
ChIP B cell ENCFF803EMO 324 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 227 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 367 bp overlap
ChIP GM23248 ENCFF404ZHM 126 bp overlap
ChIP GM23248 ENCFF506FWX 134 bp overlap
ChIP GM23248 ENCFF506FWX 336 bp overlap
ChIP GM23338 ENCFF613YON 644 bp overlap
ChIP GM23338 ENCFF886DXX 644 bp overlap
ChIP H1 ENCFF232NZA 644 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 638 bp overlap
ChIP SK-N-SH ENCFF657FZK 140 bp overlap
ChIP astrocyte ENCFF365JTP 644 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 562 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 583 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 644 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 644 bp overlap
ChIP fibroblast of lung ENCFF479BAW 528 bp overlap
ChIP hepatocyte ENCFF552DZB 644 bp overlap
ChIP keratinocyte ENCFF070STK 227 bp overlap
ChIP neural cell ENCFF610EPB 223 bp overlap
ChIP neural progenitor cell ENCFF018MKA 644 bp overlap
ChIP neural progenitor cell ENCFF472NFV 644 bp overlap
GATA2 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 53 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 369 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 552 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 495 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 297 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 406 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 175 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 172 bp overlap
HSF1 1 dataset
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 294 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 372 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 615 bp overlap
KDM4C 1 dataset
ChIP SW1783 GSE92483.KDM4C.SW1783 198 bp overlap
KDM5B 2 datasets
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 144 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 323 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 106 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 222 bp overlap
MYC 2 datasets
ChIP Kelly GSE138295.MYC.Kelly 447 bp overlap
ChIP NB69 GSE138295.MYC.NB69 261 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 250 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 644 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 112 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 268 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 183 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 644 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 422 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 258 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 402 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 82 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 259 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 644 bp overlap
POLR2A 6 datasets
ChIP esophagus muscularis mucosa ENCFF432ZCY 218 bp overlap
ChIP spleen ENCFF706IUS 194 bp overlap
ChIP spleen ENCFF706IUS 167 bp overlap
ChIP transverse colon ENCFF607LKE 100 bp overlap
ChIP transverse colon ENCFF610RWV 95 bp overlap
ChIP vagina ENCFF384GAB 144 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 644 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 541 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 303 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 401 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 163 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 515 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 607 bp overlap
RELA 2 datasets
ChIP HEK293_30_min GSE89017.RELA.HEK293_30_min 266 bp overlap
ChIP SGBS GSE64233.RELA.SGBS 226 bp overlap
RING1 2 datasets
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 293 bp overlap
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 262 bp overlap
RNF2 8 datasets
ChIP A549 ENCFF650XYA 195 bp overlap
ChIP A549 ENCFF650XYA 52 bp overlap
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 152 bp overlap
ChIP H1 ENCFF239FFS 644 bp overlap
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 174 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 370 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 125 bp overlap
ChIP K562 ENCFF653BQJ 59 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 510 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 383 bp overlap
SALL3 2 datasets
ChIP hiPSC GSE104863.SALL3.hiPSC 92 bp overlap
ChIP hiPSC GSE104863.SALL3.hiPSC 210 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 496 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 304 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 336 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 277 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 406 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 494 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 82 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 251 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 118 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 182 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 644 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 351 bp overlap
SS18 5 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 644 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 313 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 218 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 166 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 69 bp overlap
SUZ12 10 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 94 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 644 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 644 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 308 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 200 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 130 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 629 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 644 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 644 bp overlap
TCF12 3 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 87 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 232 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 195 bp overlap
TCF7L2 3 datasets
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 145 bp overlap
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 195 bp overlap
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 61 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 60 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 76 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 188 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 403 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 143 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 240 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 158 bp overlap
ZFP36 3 datasets
ChIP A-549 ENCSR294JWV.ZFP36.A-549 136 bp overlap
ChIP A-549 ENCSR294JWV.ZFP36.A-549 169 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 105 bp overlap
ZFX 1 dataset
ChIP DAOY GSE45394.ZFX.DAOY 198 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 146 bp overlap