chr2 : 222,478,021 222,478,581
560 bp 108 TFs 0 linked genes
This 560 bp open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:222,473,021 – 222,483,581
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 259 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 260 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 556 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 523 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 101 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 281 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 206 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 307 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 336 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 146 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 118 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 254 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCFF528YED 75 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 152 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 213 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 248 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 265 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 149 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 285 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 258 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 366 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 241 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 138 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 483 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 100 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 234 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 239 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 165 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 93 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 340 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 515 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 309 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 218 bp overlap
MYBL1 1 dataset
Motif DE_12h DE_12h-MYBL1_MA0776.1 12 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 9 datasets
ChIP H1 ENCFF747ZPQ 211 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 314 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 262 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 211 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 521 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 260 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 266 bp overlap
ChIP hESC GSE20650.NANOG.hESC 195 bp overlap
ChIP hESC GSE18292.NANOG.hESC 110 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Nanog 1 dataset
Motif DE_12h DE_12h-Nanog_MA2339.1 7 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 217 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 131 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 436 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 430 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 322 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 142 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 368 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 481 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 151 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 364 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 180 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 384 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 301 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 139 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 560 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 463 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCFF513YVP 202 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 152 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 199 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 149 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 181 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 250 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 264 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 249 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 169 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 221 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 257 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 82 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 89 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 225 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 155 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 554 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 232 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 388 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 560 bp overlap
SSRP1 1 dataset
ChIP HT-1080_CBL0100 GSE107595.SSRP1.HT-1080_CBL0100 237 bp overlap
TCF7L2 3 datasets
ChIP HEK293 ENCFF513JQN 277 bp overlap
ChIP HEK293 ENCFF513JQN 59 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 124 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 186 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 483 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 344 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 206 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 122 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCFF809BPK 185 bp overlap
ChIP HEK293 ENCFF809BPK 148 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 560 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 61 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 270 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 264 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 105 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF398 3 datasets
ChIP H9 GSE133630.ZNF398.H9 95 bp overlap
ChIP HEK293 ENCFF184XEW 426 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 489 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 354 bp overlap
ZNF534 2 datasets
ChIP HEK293T GSE78099.ZNF534.HEK293T 93 bp overlap
ChIP HEK293T GSE78099.ZNF534.HEK293T 126 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 161 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 165 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 484 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 226 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 417 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap