chr1 : 47,208,388 – 47,208,956
568 bp 76 TFs 3 linked genes
This 568 bp open chromatin element is linked to CYP4A22-AS1, STIL, and CMPK1 and is bound by 76 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CYP4A22-AS1 29.4 kb Distal Multiome
STIL 105.5 kb Distal Multiome
CMPK1 125.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:47,203,388 – 47,213,956
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 316 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 568 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 73 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 492 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 229 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 217 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 568 bp overlap
BHLHE40 1 dataset
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 169 bp overlap
BRD4 2 datasets
ChIP 402-91 GSE111253.BRD4.402-91 228 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 343 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 325 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 487 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 124 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 172 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 387 bp overlap
CTBP2 2 datasets
ChIP WA01 ENCSR000EUO.CTBP2.WA01 134 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 318 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 322 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 403 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 210 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 312 bp overlap
ESR1 1 dataset
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 98 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 8 datasets
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 568 bp overlap
ChIP H1 ENCFF232NZA 432 bp overlap
ChIP H1 ENCFF232NZA 180 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 60 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 253 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 356 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 196 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 192 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 164 bp overlap
ChIP WTC11 ENCFF338WGC 354 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 341 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 392 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 381 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 290 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 301 bp overlap
JARID2 4 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 70 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 448 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 541 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 222 bp overlap
JUN 6 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 362 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 279 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 161 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 476 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 375 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 116 bp overlap
JUNB 2 datasets
ChIP GM23338 ENCFF224LRO 150 bp overlap
ChIP hESC ENCSR917MAH.JUNB.hESC 75 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 450 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 568 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 218 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 87 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 457 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 100 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 316 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 469 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 279 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 418 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 227 bp overlap
NFKBIA 1 dataset
ChIP dermal GSE30082.NFKBIA.dermal 222 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 304 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 568 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 234 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 207 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 316 bp overlap
ChIP K562 ENCFF648YPL 331 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 335 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 400 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 568 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 426 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 568 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 201 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 137 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 298 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 256 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 278 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 346 bp overlap
PRDM15 2 datasets
ChIP WTC11 ENCFF108TMF 237 bp overlap
ChIP WTC11 ENCFF108TMF 401 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 409 bp overlap
RBM39 1 dataset
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 186 bp overlap
RNF2 3 datasets
ChIP WA01 GSE104690.RNF2.WA01 352 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 511 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 545 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 145 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 400 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 302 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 130 bp overlap
ChIP hiPSC_IA12 GSE106870.SIN3A.hiPSC_IA12 194 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 185 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 121 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 280 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 368 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 226 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 453 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 437 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 379 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 295 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 309 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 318 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 168 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 269 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 278 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 334 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 215 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 265 bp overlap
SREBP2 1 dataset
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 236 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 278 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 116 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 255 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 148 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 338 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 199 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 189 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 374 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCFF809BPK 162 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 319 bp overlap
ChIP U2OS GSE96776.ZBTB48.U2OS 401 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 322 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 95 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 72 bp overlap
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