chr2 : 120,786,141 120,786,851
710 bp 86 TFs 1 linked gene
This 710 bp open chromatin element is linked to GLI2 and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GLI2 50.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:120,781,141 – 120,791,851
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 437 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 408 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 299 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 278 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 217 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 256 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 228 bp overlap
CHD1 1 dataset
ChIP LNCaP_DHT GSE64528.CHD1.LNCaP_DHT 73 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 158 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 492 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 170 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 144 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 95 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 165 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 162 bp overlap
Dmrt1 2 datasets
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
Motif ES_0h ES_0h-Dmrt1_MA1603.2 9 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 216 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 83 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 195 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 229 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 285 bp overlap
ChIP hESC GSE17917.EP300.hESC 340 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 328 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 312 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 244 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 240 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 334 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 186 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 340 bp overlap
Foxl2 2 datasets
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GABPA 1 dataset
ChIP H1 ENCFF739QFD 249 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 133 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 475 bp overlap
ChIP H1 ENCFF353UJQ 265 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 168 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 307 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 287 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 159 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 216 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 245 bp overlap
MLLT1 2 datasets
ChIP K-562 ENCSR107GRP.MLLT1.K-562 294 bp overlap
ChIP K562 ENCFF074XRJ 212 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 351 bp overlap
MYC 2 datasets
ChIP H1 ENCFF794ZJT 184 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 74 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 220 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 302 bp overlap
ChIP H1 ENCFF747ZPQ 61 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 710 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 598 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 426 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 603 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 610 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 479 bp overlap
ChIP hESC GSE20650.NANOG.hESC 300 bp overlap
ChIP hESC GSE18292.NANOG.hESC 251 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 96 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 418 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 422 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 533 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 499 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 451 bp overlap
NR2C2 2 datasets
ChIP HeLa-S3 ENCFF796ZSS 271 bp overlap
ChIP HeLa-S3 ENCSR000EVN.NR2C2.HeLa-S3 176 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 392 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 301 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 539 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 442 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 230 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 358 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 235 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 305 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 506 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 364 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 335 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 521 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 393 bp overlap
REST 3 datasets
ChIP K-562 ENCSR137ZMQ.REST.K-562 232 bp overlap
ChIP K562 ENCFF688UKW 298 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 144 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 87 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 360 bp overlap
ChIP H1 ENCFF896IJG 240 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 163 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 95 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 271 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 90 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 185 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 221 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 167 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 251 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 608 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 290 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 610 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 215 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 576 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 197 bp overlap
ChIP hESC GSE69479.SOX2.hESC 257 bp overlap
ChIP hESC GSE18292.SOX2.hESC 213 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 414 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 216 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 312 bp overlap
SP4 3 datasets
ChIP H1 ENCFF473YOB 457 bp overlap
ChIP H1 ENCFF473YOB 80 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 184 bp overlap
SRF 9 datasets
Motif ES_0h ES_0h-SRF_MA0083.3 16 bp overlap
ChIP H1 ENCFF036PEF 208 bp overlap
ChIP HCT-116 ENCSR000BSC.SRF.HCT-116 175 bp overlap
ChIP HepG2 ENCFF625QHW 171 bp overlap
ChIP Ishikawa ENCFF992QXM 265 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 197 bp overlap
ChIP K-562 ENCSR000BLK.SRF.K-562 153 bp overlap
ChIP K562 ENCFF664RPC 200 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 233 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 279 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 227 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 512 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 230 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 268 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 186 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 307 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 160 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 256 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 282 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 289 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 254 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 311 bp overlap
ChIP K562 ENCFF731UTU 204 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 431 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 128 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZMIZ1 2 datasets
ChIP K-562 ENCSR907JPB.ZMIZ1.K-562 190 bp overlap
ChIP K562 ENCFF681OHJ 219 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 403 bp overlap
ZNF23 3 datasets
ChIP HEK293 ENCFF509FSS 218 bp overlap
ChIP HEK293 ENCSR679KXF.ZNF23.HEK293 299 bp overlap
ChIP K-562 ENCSR898IDK.ZNF23.K-562 251 bp overlap
ZNF280A 1 dataset
ChIP HEK293 GSE76494.ZNF280A.HEK293 121 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 121 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCFF896CCA 184 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 205 bp overlap
ZNF528 2 datasets
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ChIP HEK293 GSE76494.ZNF528.HEK293 223 bp overlap
ZNF667 2 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZNF816 2 datasets
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap