chr2 : 75,430,414 75,431,141
727 bp 108 TFs 0 linked genes
This 727 bp open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:75,425,414 – 75,436,141
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP GM12878 ENCFF831TWO 505 bp overlap
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 83 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
BCL6B 2 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif DE_24h DE_24h-BCL6B_MA0731.1 17 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF521IZR 106 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 165 bp overlap
BHLHE41 1 dataset
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
BRD4 2 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 334 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 328 bp overlap
CLOCK 1 dataset
Motif DE_12h DE_12h-CLOCK_MA0819.3 7 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 217 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 175 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 279 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 145 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 251 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 727 bp overlap
ChIP DE DE-FOXA2-2 339 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 727 bp overlap
ChIP DE DE-GATA4-2 727 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 581 bp overlap
ChIP DE DE-GATA6-1 64 bp overlap
ChIP DE DE-GATA6-2 727 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 560 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 660 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 568 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 285 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 160 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 699 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 324 bp overlap
HES1 1 dataset
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
HES2 1 dataset
Motif DE_12h DE_12h-HES2_MA0616.3 9 bp overlap
HES5 1 dataset
Motif DE_12h DE_12h-HES5_MA0821.2 10 bp overlap
HES6 1 dataset
Motif DE_12h DE_12h-HES6_MA1493.1 10 bp overlap
HEY1 1 dataset
Motif DE_12h DE_12h-HEY1_MA0823.1 10 bp overlap
HEY2 1 dataset
Motif DE_12h DE_12h-HEY2_MA0649.2 9 bp overlap
HIF1A 2 datasets
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
HOXB13 2 datasets
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Motif DE_24h DE_24h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 2 datasets
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_24h DE_24h-Hoxa13_MA0650.4 8 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 525 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 695 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 487 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 648 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MAX 1 dataset
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
MAX::MYC 1 dataset
Motif DE_12h DE_12h-MAXMYC_MA0059.2 10 bp overlap
MAZ 2 datasets
ChIP GM12878 ENCFF453CES 170 bp overlap
ChIP GM12878 ENCFF453CES 457 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 260 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 255 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 411 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 308 bp overlap
MLX 1 dataset
Motif DE_12h DE_12h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MYC 1 dataset
Motif DE_12h DE_12h-MYC_MA0147.4 8 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 332 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 242 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 219 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 154 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 152 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
ChIP GM12878 ENCFF273VKX 455 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 166 bp overlap
Npas2 1 dataset
Motif DE_12h DE_12h-Npas2_MA0626.2 8 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 234 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 390 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 374 bp overlap
Pparg::Rxra 3 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCFF916JXQ 441 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 150 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 236 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 214 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 484 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 461 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 526 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 236 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 297 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCFF327LDR 81 bp overlap
SOHLH2 1 dataset
Motif DE_12h DE_12h-SOHLH2_MA1560.2 8 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 169 bp overlap
TBP 2 datasets
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
Motif DE_24h DE_24h-TBP_MA0108.3 7 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 170 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
ZBTB4 1 dataset
ChIP GM12878 ENCFF811BTD 226 bp overlap
ZIC4 3 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 3 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF282 2 datasets
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
Motif DE_24h DE_24h-ZNF282_MA1154.2 15 bp overlap
ZNF320 2 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF592 2 datasets
ChIP GM12878 ENCFF818ABS 285 bp overlap
ChIP GM12878 ENCSR173ZVL.ZNF592.GM12878 215 bp overlap
ZNF667 2 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif DE_36h DE_36h-ZNF667_MA1984.2 11 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 293 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 299 bp overlap
ZNF707 1 dataset
Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap
ZNF75A 2 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
ZNF784 2 datasets
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap
ZNF816 4 datasets
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap