chrX : 153,056,321 – 153,056,546
225 bp 78 TFs 1 linked gene
This 225 bp open chromatin element is linked to PNMA3 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PNMA3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:153,051,321 – 153,061,546
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP GSE83650.AR.VCaP 200 bp overlap
ChIP VCaP GSE98809.AR.VCaP 200 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 225 bp overlap
ARNTL 1 dataset
ChIP GSC_3565 GSE134972.ARNTL.GSC_3565 225 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 215 bp overlap
ChIP K562 ENCFF308SKS 225 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 225 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 225 bp overlap
BRD2 1 dataset
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 75 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 225 bp overlap
BRD4 7 datasets
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 186 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 71 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 119 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 225 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 73 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 102 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 225 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 225 bp overlap
CREB1 5 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 194 bp overlap
ChIP GM23338 ENCFF432ZEW 142 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 129 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 160 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 163 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 225 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 119 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 225 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 161 bp overlap
E2F6 8 datasets
ChIP A-549 ENCSR000BTC.E2F6.A-549 134 bp overlap
ChIP A549 ENCFF550XVR 225 bp overlap
ChIP H1 ENCFF785DWK 216 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 225 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 191 bp overlap
ChIP K562 ENCFF136LTS 198 bp overlap
ChIP K562 ENCFF163WMT 182 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 225 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 90 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 225 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 225 bp overlap
ChIP K-562 GSE23730.ERG.K-562 219 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ESRRA 1 dataset
ChIP WTC11 ENCFF591YCA 225 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 105 bp overlap
EZH2 4 datasets
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 145 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 180 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 225 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 216 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 225 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 96 bp overlap
FOXP2 1 dataset
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 101 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 225 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 106 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 140 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 225 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 225 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 202 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 181 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 225 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 225 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 223 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 225 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 225 bp overlap
JUND 3 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 54 bp overlap
ChIP Kasumi-1_ctrl GSE117105.JUND.Kasumi-1_ctrl 89 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 79 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 225 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 225 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 128 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 138 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 225 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 225 bp overlap
ChIP K562 ENCFF320EQC 225 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 77 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 101 bp overlap
MAX 12 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 155 bp overlap
ChIP A-549 ENCSR000DYG.MAX.A-549 123 bp overlap
ChIP A549 ENCFF310XGQ 123 bp overlap
ChIP H1 ENCFF914VQY 203 bp overlap
ChIP Ishikawa ENCFF064TDQ 193 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 187 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 155 bp overlap
ChIP K562 ENCFF110LJS 225 bp overlap
ChIP K562 ENCFF398VJM 225 bp overlap
ChIP K562 ENCFF524IJO 185 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 122 bp overlap
ChIP WTC11 ENCFF223QFY 225 bp overlap
MGA 3 datasets
ChIP A-549 GSE112188.MGA.A-549 135 bp overlap
ChIP K-562 ENCSR710WLO.MGA.K-562 137 bp overlap
ChIP K562 ENCFF140CEX 94 bp overlap
MITF 4 datasets
ChIP 501-mel GSE137522.MITF.501-mel 222 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 225 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 225 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 60 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 200 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 202 bp overlap
ChIP K-562 ENCSR000EGJ.MYC.K-562 154 bp overlap
MYCN 8 datasets
ChIP BE2C GSE80151.MYCN.BE2C 202 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 121 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 225 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 104 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 225 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 225 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 53 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 202 bp overlap
NANOG 1 dataset
ChIP WA01 ERP004238.NANOG.WA01 124 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 216 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 159 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 158 bp overlap
NFKB1 2 datasets
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 83 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 67 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 225 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 225 bp overlap
NRF1 8 datasets
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 186 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 225 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 225 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 166 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 121 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 133 bp overlap
ChIP K562 ENCFF130SGK 128 bp overlap
ChIP K562 ENCFF791UHF 225 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 225 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 225 bp overlap
PHF8 2 datasets
ChIP H1 ENCFF427UFV 225 bp overlap
ChIP WA01 ENCSR000ATK.PHF8.WA01 120 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 225 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 225 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 225 bp overlap
RBFOX2 3 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 208 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 208 bp overlap
ChIP K562 ENCFF967GRF 164 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 225 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 225 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 225 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 225 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 148 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 225 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 209 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 132 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 225 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 202 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 225 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 225 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 225 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 78 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 225 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 225 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 168 bp overlap
TCF7 2 datasets
ChIP breast-organoid_BRCA1-mut GSE113909.TCF7.breast-organoid_BRCA1-mut 225 bp overlap
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 225 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 225 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF584VSB 225 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 225 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 225 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 225 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 225 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 225 bp overlap
USF1 7 datasets
ChIP H1 ENCFF090WVU 164 bp overlap
ChIP Ishikawa ENCFF728IEG 183 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 225 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 225 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 225 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 96 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 225 bp overlap
USF2 6 datasets
ChIP IMR-90 ENCFF438KUN 200 bp overlap
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 156 bp overlap
ChIP K-562 GSE111469.USF2.K-562 198 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 130 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 166 bp overlap
ChIP WTC11 ENCFF139JAW 225 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 140 bp overlap
ChIP K562 ENCFF053XDV 225 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 225 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 221 bp overlap
ZBTB7A 4 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 225 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 149 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 225 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 154 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 225 bp overlap
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