chr20 : 32,950,448 – 32,950,932
484 bp 85 TFs 5 linked genes
This 484 bp open chromatin element is linked to 5 target genes and is bound by 85 transcription factors.
Linked Genes
5 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EFCAB8 91.8 kb Distal Multiome
ENSG00000260257 94.1 kb Distal Multiome
MAPRE1 130.8 kb Distal Multiome
DNMT3B 188.3 kb Distal Multiome
COMMD7 207.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:32,945,448 – 32,955,932
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_48h DE_48h-ASCL1_MA1100.3 8 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1100.3 8 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
BHLHE22 2 datasets
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 244 bp overlap
CEBPB 1 dataset
ChIP H1 ENCFF871PTR 261 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 484 bp overlap
CTCF 2 datasets
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ChIP BLaER1 ENCFF335XTP 207 bp overlap
EBF3 2 datasets
Motif DE_48h DE_48h-EBF3_MA1637.2 9 bp overlap
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 297 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 484 bp overlap
Ebf2 2 datasets
Motif DE_48h DE_48h-Ebf2_MA1604.2 9 bp overlap
Motif DE_72h DE_72h-Ebf2_MA1604.2 9 bp overlap
FIGLA 3 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 432 bp overlap
ChIP DE DE-FOXA2-2 433 bp overlap
GATA1::TAL1 3 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 1 dataset
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 443 bp overlap
ChIP DE DE-GATA4-2 484 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 484 bp overlap
ChIP DE DE-GATA6-2 484 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 446 bp overlap
ChIP foregut GSE117136.GATA6.foregut 370 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC6 1 dataset
ChIP H1 ENCFF799IKG 151 bp overlap
HOXB13 3 datasets
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
IRF3 2 datasets
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 353 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 298 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 231 bp overlap
KLF5 2 datasets
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
MAZ 2 datasets
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MYOG 2 datasets
Motif DE_48h DE_48h-MYOG_MA0500.3 8 bp overlap
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
MZF1 2 datasets
Motif DE_48h DE_48h-MZF1_MA0056.3 8 bp overlap
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
NFKB1 2 datasets
Motif DE_48h DE_48h-NFKB1_MA0105.4 13 bp overlap
Motif DE_72h DE_72h-NFKB1_MA0105.4 13 bp overlap
NHLH1 2 datasets
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NR6A1 2 datasets
Motif DE_48h DE_48h-NR6A1_MA1541.2 14 bp overlap
Motif DE_72h DE_72h-NR6A1_MA1541.2 14 bp overlap
Neurod2 2 datasets
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
OSR1 1 dataset
Motif DE_72h DE_72h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
Olig2 2 datasets
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PATZ1 2 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 480 bp overlap
ChIP H1 ENCFF833NJP 263 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_72h DE_72h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 171 bp overlap
PPARA::RXRA 2 datasets
Motif DE_48h DE_48h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_72h DE_72h-PPARARXRA_MA1148.2 17 bp overlap
PRDM14 4 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 316 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 69 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 375 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 262 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_72h DE_72h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
RXRA 1 dataset
ChIP H1 ENCFF570NHK 201 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 394 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 451 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 429 bp overlap
SNAI3 3 datasets
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX13 2 datasets
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX15 1 dataset
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 484 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 484 bp overlap
SOX2 2 datasets
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX9 2 datasets
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 164 bp overlap
SP4 2 datasets
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 5 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 289 bp overlap
STAT3 3 datasets
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 147 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 150 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 150 bp overlap
Sox11 1 dataset
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Sox3 2 datasets
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 144 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 87 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 244 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 3 datasets
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD2 3 datasets
Motif DE_48h DE_48h-TEAD2_MA1121.2 7 bp overlap
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD3 3 datasets
Motif DE_48h DE_48h-TEAD3_MA0808.1 8 bp overlap
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 4 datasets
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf12 2 datasets
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
Wt1 2 datasets
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
ZBTB6 2 datasets
Motif DE_48h DE_48h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 3 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP14 3 datasets
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZNF148 2 datasets
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF281 2 datasets
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF418 5 datasets
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF460 3 datasets
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF582 1 dataset
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF677 2 datasets
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
Zfp335 2 datasets
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
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