chr1 : 245,041,050 245,042,022
972 bp 89 TFs 0 linked genes
This 972 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:245,036,050 – 245,047,022
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 255 bp overlap
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 186 bp overlap
AR 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 154 bp overlap
ATF2 2 datasets
ChIP K-562 ENCSR869IUD.ATF2.K-562 299 bp overlap
ChIP K562 ENCFF139ZZG 391 bp overlap
ATF3 2 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 153 bp overlap
ChIP K562 ENCFF921JQW 274 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 156 bp overlap
ChIP K562 ENCFF674KTF 99 bp overlap
BCL11A 1 dataset
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 60 bp overlap
BRD3 4 datasets
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 228 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 271 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 172 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 139 bp overlap
BRD4 7 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 212 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 196 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 223 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 164 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 409 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 212 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 239 bp overlap
CDK6 2 datasets
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 340 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 176 bp overlap
CREM 2 datasets
ChIP K-562 ENCSR077DKV.CREM.K-562 171 bp overlap
ChIP K562 ENCFF180STA 301 bp overlap
CTBP1 1 dataset
ChIP HEK293T ENCFF003PDY 182 bp overlap
CTCF 39 datasets
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 195 bp overlap
ChIP Caco-2 ENCFF753NZV 314 bp overlap
ChIP Caco-2 ENCFF753NZV 445 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 196 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 205 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 267 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H9 ENCFF152GTF 434 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 179 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 239 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 212 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 190 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 146 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 135 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 115 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 480 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 201 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 235 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 138 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 380 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 172 bp overlap
ChIP OCI-LY1 ENCFF455ESK 451 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 402 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 395 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 362 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 289 bp overlap
ChIP Panc1 ENCFF056JQX 662 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 241 bp overlap
ChIP endodermal cell ENCFF471YCZ 311 bp overlap
ChIP endodermal cell ENCFF471YCZ 133 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 256 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 153 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 108 bp overlap
ChIP lung_left_upper-lobe ENCSR027FSZ.CTCF.lung_left_upper-lobe 217 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 329 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 277 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DPF2 2 datasets
ChIP K562 ENCFF775HUO 472 bp overlap
ChIP K562 ENCFF775HUO 577 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 431 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 431 bp overlap
Dmbx1 1 dataset
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
E2F1 2 datasets
ChIP K-562 ENCSR720HUL.E2F1.K-562 447 bp overlap
ChIP K562 ENCFF191BFW 498 bp overlap
EHMT2 2 datasets
ChIP K-562 ENCSR175EOM.EHMT2.K-562 352 bp overlap
ChIP K562 ENCFF053BWO 385 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 133 bp overlap
FOXA1 11 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 97 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 67 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 97 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 67 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 72 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 111 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 134 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 59 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 203 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 349 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 127 bp overlap
FOXA2 9 datasets
ChIP DE DE-FOXA2-1 912 bp overlap
ChIP DE DE-FOXA2-2 361 bp overlap
ChIP DE DE-FOXA2-2 264 bp overlap
ChIP HepG2 ENCFF570ABM 106 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 167 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 148 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 128 bp overlap
ChIP PC-3_Veh GSE148982.FOXA2.PC-3_Veh 60 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 149 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 190 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 185 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 161 bp overlap
ChIP erythroid_R3R4 GSE43625.GATA1.erythroid_R3R4 72 bp overlap
GATA2 4 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 252 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 232 bp overlap
ChIP SK-N-SH ENCFF764OZD 279 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 169 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 183 bp overlap
GATA4 9 datasets
ChIP DE DE-GATA4-1 972 bp overlap
ChIP DE DE-GATA4-2 972 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 196 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 166 bp overlap
ChIP foregut GSE117136.GATA4.foregut 268 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 281 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 297 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 279 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 428 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 174 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 105 bp overlap
ChIP DE DE-GATA6-1 937 bp overlap
ChIP DE DE-GATA6-2 962 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 269 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 278 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 805 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 293 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 404 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 272 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 265 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 233 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 244 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 218 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 243 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 113 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 118 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 265 bp overlap
HIF1A 1 dataset
ChIP macrophage_HYPO GSE43109.HIF1A.macrophage_HYPO 78 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 260 bp overlap
KLF1 1 dataset
ChIP erythroid_R3R4 GSE43625.KLF1.erythroid_R3R4 93 bp overlap
KMT2A 3 datasets
ChIP MV4-11 GSE83671.KMT2A.MV4-11 530 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 191 bp overlap
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 398 bp overlap
Lef1 1 dataset
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 217 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR000EFX.MAZ.K-562 131 bp overlap
MED1 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 159 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 486 bp overlap
MLLT1_FKB 2 datasets
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 611 bp overlap
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 79 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 176 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 316 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 757 bp overlap
NR2F2 3 datasets
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 207 bp overlap
ChIP HepG2 ENCFF483TVJ 323 bp overlap
ChIP K-562 ENCSR000BRS.NR2F2.K-562 172 bp overlap
NR2F6 3 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 227 bp overlap
ChIP K-562 ENCSR707QWA.NR2F6.K-562 229 bp overlap
ChIP K562 ENCFF674RQA 313 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
ONECUT1 5 datasets
ChIP H9 ERP004206.ONECUT1.H9 182 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 208 bp overlap
ChIP HepG2 ENCFF243FIR 95 bp overlap
ChIP liver ERP002306.ONECUT1.liver 167 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 375 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 153 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PDX1 3 datasets
ChIP hESC GSE58685.PDX1.hESC 197 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 106 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 188 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 322 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 302 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 156 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 234 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 368 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 235 bp overlap
Pgr 1 dataset
Motif DE_48h DE_48h-Pgr_MA2323.1 17 bp overlap
Prdm5 1 dataset
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
RAD21 7 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 108 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 327 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 113 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 163 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP THP-1 GSE55407.RAD21.THP-1 143 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 472 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 169 bp overlap
ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 126 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 304 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 400 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 101 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 246 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 157 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 803 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 337 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 105 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 105 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 184 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 184 bp overlap
ZBTB33 2 datasets
ChIP HepG2 ENCFF778UKV 337 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 303 bp overlap
ZEB2 1 dataset
ChIP K562 ENCFF795CMH 462 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 173 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 152 bp overlap
ZNF214 1 dataset
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap
ZNF223 2 datasets
ChIP HEK293 ENCFF408UAU 371 bp overlap
ChIP HEK293 ENCSR906PCS.ZNF223.HEK293 240 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 202 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 134 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 486 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 444 bp overlap