chr1 : 240,280,734 240,281,080
346 bp 90 TFs 0 linked genes
This 346 bp open chromatin element has no linked target genes and is bound by 90 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:240,275,734 – 240,286,080
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
AR 5 datasets
ChIP MCF-7 ERP001226.AR.MCF-7 132 bp overlap
ChIP VCaP GSE148358.AR.VCaP 346 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 106 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 185 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 346 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 299 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 346 bp overlap
BCL11A 2 datasets
ChIP HEK293 ENCFF294OHB 240 bp overlap
ChIP HEK293 ENCSR021DJC.BCL11A.HEK293 206 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 284 bp overlap
BRD4 1 dataset
ChIP VCaP GSE148358.BRD4.VCaP 148 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 159 bp overlap
EP300 3 datasets
ChIP HeLa-S3 ENCFF089VPQ 160 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 249 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 303 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 236 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 132 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 281 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 227 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 228 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 329 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 244 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 295 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 346 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 263 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 121 bp overlap
FOXA1 22 datasets
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 267 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 206 bp overlap
ChIP HEK293_v5_TFS GSE123618.FOXA1.HEK293_v5_TFS 243 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 298 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 257 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 346 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 241 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 170 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 181 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 229 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 207 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 243 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 207 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 209 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 237 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 226 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 293 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 336 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 346 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 267 bp overlap
ChIP prostate_P1_T GSE130408.FOXA1.prostate_P1_T 209 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 253 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 346 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 284 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 346 bp overlap
FOXM1 1 dataset
ChIP HEK293 GSE60032.FOXM1.HEK293 250 bp overlap
GATA2 2 datasets
ChIP VCaP GSE125236.GATA2.VCaP 182 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 249 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 181 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 183 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 204 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 326 bp overlap
ChIP DE DE-GATA4-2 346 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 346 bp overlap
ChIP foregut GSE117136.GATA4.foregut 307 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 346 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 325 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 346 bp overlap
ChIP AGS GSE51936.GATA6.AGS 95 bp overlap
ChIP DE DE-GATA6-1 332 bp overlap
ChIP DE DE-GATA6-2 346 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 314 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 175 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 224 bp overlap
ChIP foregut GSE117136.GATA6.foregut 315 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 346 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 328 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 317 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 320 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 320 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 346 bp overlap
HOXB13 5 datasets
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 156 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 123 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 90 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 253 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 178 bp overlap
HOXD13 1 dataset
ChIP HEK293 ENCFF590OUV 290 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 261 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 293 bp overlap
JUN 1 dataset
ChIP HeLa-S3 ENCFF668QVP 337 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 227 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 297 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 219 bp overlap
KLF13 1 dataset
ChIP HEK293 ENCSR946ZLI.KLF13.HEK293 273 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCFF658MHR 346 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 248 bp overlap
KLF5 1 dataset
ChIP GP5D GSE51234.KLF5.GP5D 261 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 238 bp overlap
KMT2A 2 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 336 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 209 bp overlap
MAX 2 datasets
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 118 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 306 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 346 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 108 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 167 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 274 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 283 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 270 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 288 bp overlap
OVOL3 2 datasets
ChIP HEK293 ENCFF898STB 335 bp overlap
ChIP HEK293 ENCSR768LIO.OVOL3.HEK293 346 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 140 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 346 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 259 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 227 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 310 bp overlap
ChIP stomach ENCFF820WZN 197 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 344 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 346 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 346 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 298 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 97 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 346 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 250 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 210 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 252 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 273 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 319 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 273 bp overlap
STAT3 1 dataset
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 86 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 325 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 322 bp overlap
TRIM28 4 datasets
ChIP HEK293 ENCFF265CEM 341 bp overlap
ChIP HEK293 ENCFF582MWI 346 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 237 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 346 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 165 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 285 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 346 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 346 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 255 bp overlap
ChIP HEK293 ENCFF865LIO 346 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 233 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 233 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCFF809BPK 118 bp overlap
ChIP HEK293 ENCFF809BPK 318 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 143 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 344 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 223 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 341 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 246 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 141 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 182 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 152 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 300 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 180 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 346 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 322 bp overlap
ChIP HEK293 ENCFF784SLD 346 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 286 bp overlap
ZNF34 2 datasets
ChIP HEK293 ENCFF481TFV 312 bp overlap
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 331 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 346 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 97 bp overlap
ZNF549 2 datasets
ChIP HEK293 ENCFF565EYY 156 bp overlap
ChIP HEK293 ENCSR185QFX.ZNF549.HEK293 191 bp overlap
ZNF580 3 datasets
ChIP HEK293 ENCFF906MQV 233 bp overlap
ChIP HEK293 ENCFF906MQV 308 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 346 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 226 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 244 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 222 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 346 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 293 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 346 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 346 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 217 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 299 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 346 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 118 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 155 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 249 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 247 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 298 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 346 bp overlap