chr15 : 89,368,389 89,368,975
586 bp 81 TFs 3 linked genes
This 586 bp open chromatin element is linked to MIR9-3, MIR9-3HG, and ENSG00000279708 and is bound by 81 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
MIR9-3 373 bp At TSS Proximity
MIR9-3HG 2.6 kb Proximal Proximity
ENSG00000279708 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:89,363,389 – 89,373,975
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 208 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 343 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 586 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 130 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 393 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 70 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 586 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 325 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 434 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 130 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 315 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 111 bp overlap
CBX7 4 datasets
ChIP HEK293T_PCGF2fl_OHT GSE119618.CBX7.HEK293T_PCGF2fl_OHT 483 bp overlap
ChIP hESC GSE133412.CBX7.hESC 584 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 522 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 540 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 300 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 370 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 154 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 81 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 121 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 408 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 140 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 319 bp overlap
E2F6 3 datasets
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 276 bp overlap
EGR1 2 datasets
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
Motif ES_0h ES_0h-EGR1_MA0162.5 10 bp overlap
EGR3 2 datasets
Motif DE_24h DE_24h-EGR3_MA0732.2 11 bp overlap
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
EGR4 2 datasets
Motif DE_24h DE_24h-EGR4_MA0733.2 11 bp overlap
Motif ES_0h ES_0h-EGR4_MA0733.2 11 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 286 bp overlap
ESR1 2 datasets
ChIP breast_tumor_Male_3 GSE104399.ESR1.breast_tumor_Male_3 86 bp overlap
ChIP breast_tumor_Male_3 GSE104399.ESR1.breast_tumor_Male_3 169 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 220 bp overlap
EZH2 36 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 586 bp overlap
ChIP GM23248 ENCFF404ZHM 428 bp overlap
ChIP GM23248 ENCFF506FWX 111 bp overlap
ChIP GM23338 ENCFF613YON 146 bp overlap
ChIP GM23338 ENCFF613YON 445 bp overlap
ChIP H1 ENCFF232NZA 586 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 366 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 460 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 337 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 429 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 219 bp overlap
ChIP OCI-LY7 ENCFF395KPU 451 bp overlap
ChIP OCI-LY7 ENCFF395KPU 176 bp overlap
ChIP OCI-LY7 ENCFF434OYG 176 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 501 bp overlap
ChIP T98G GSE112240.EZH2.T98G 100 bp overlap
ChIP T98G GSE112240.EZH2.T98G 328 bp overlap
ChIP astrocyte ENCFF365JTP 193 bp overlap
ChIP astrocyte ENCFF365JTP 483 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 162 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 327 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 155 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 586 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 586 bp overlap
ChIP fibroblast of lung ENCFF479BAW 315 bp overlap
ChIP fibroblast of lung ENCFF479BAW 106 bp overlap
ChIP hepatocyte ENCFF552DZB 586 bp overlap
ChIP keratinocyte ENCFF070STK 124 bp overlap
ChIP keratinocyte ENCFF070STK 166 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 213 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 200 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 267 bp overlap
ChIP myotube ENCFF857GWB 97 bp overlap
ChIP neural progenitor cell ENCFF018MKA 586 bp overlap
ChIP neural progenitor cell ENCFF472NFV 586 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 324 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 125 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 190 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 302 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 252 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 182 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 151 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 131 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 339 bp overlap
JARID2 4 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 505 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 98 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 358 bp overlap
ChIP hESC GSE133412.JARID2.hESC 487 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 84 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 304 bp overlap
KAT7 2 datasets
ChIP MOLM-13 GSE133516.KAT7.MOLM-13 158 bp overlap
ChIP MOLM-13 GSE133516.KAT7.MOLM-13 331 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 172 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 219 bp overlap
KLF11 2 datasets
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF14 2 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF15 2 datasets
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 210 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 449 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 229 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 138 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 246 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 235 bp overlap
MYC 1 dataset
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 418 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 441 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 586 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 171 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 140 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 352 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 307 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 311 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 295 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 322 bp overlap
PAX5 1 dataset
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 127 bp overlap
PCBP1 3 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 180 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 157 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 290 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 586 bp overlap
PHC1 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PHC1.HEK293T_PCGF2fl 295 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 227 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 586 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 79 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 351 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 334 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 586 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 225 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 149 bp overlap
REST 1 dataset
ChIP LNCaP GSE119385.REST.LNCaP 459 bp overlap
RFX1 8 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 136 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 109 bp overlap
ChIP K562 ENCFF421AVO 106 bp overlap
ChIP K562 ENCFF809XVG 100 bp overlap
ChIP MCF-7 ENCFF782EZS 83 bp overlap
ChIP MCF-7 ENCFF973QAD 57 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 150 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 134 bp overlap
RNF2 11 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 51 bp overlap
ChIP H1 ENCFF239FFS 199 bp overlap
ChIP H1 ENCFF239FFS 92 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 449 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 386 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 435 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 350 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 550 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.RNF2.HEK293T_PCGF2fl_OHT 282 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 311 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 104 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 208 bp overlap
SMARCA4 10 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 124 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 242 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 219 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 127 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 357 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 88 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 407 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 93 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 190 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 500 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 586 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 384 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 446 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 280 bp overlap
SP2 3 datasets
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 194 bp overlap
SP5 2 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP9 2 datasets
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 306 bp overlap
SUZ12 19 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 282 bp overlap
ChIP GM12878 ENCFF498QAM 371 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 373 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 260 bp overlap
ChIP H1 ENCFF881NFR 586 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 586 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 513 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 579 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 555 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 567 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 586 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 447 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 164 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 417 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 586 bp overlap
ChIP NT2/D1 ENCFF574SXS 364 bp overlap
ChIP NT2/D1 ENCFF574SXS 62 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 356 bp overlap
ChIP hESC GSE133412.SUZ12.hESC 330 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 154 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 153 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 137 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 75 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 370 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 299 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 140 bp overlap
ZBTB33 2 datasets
ChIP MCF-7 ENCFF622BUU 239 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 176 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 144 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 277 bp overlap
ZFX 2 datasets
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 124 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 412 bp overlap
ZNF263 4 datasets
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ChIP HEK293 ENCFF336CWQ 175 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 75 bp overlap
ZNF460 2 datasets
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap