chr15 : 88,982,989 88,983,702
713 bp 90 TFs 3 linked genes
This 713 bp open chromatin element is linked to MFGE8, ABHD2, and FANCI and is bound by 90 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
MFGE8 69.8 kb Distal Multiome+HiCAR
ABHD2 105.3 kb Distal Multiome
FANCI 260.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:88,977,989 – 88,988,702
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 61 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 75 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 422 bp overlap
BCLAF1 1 dataset
ChIP GM12878 ENCFF306JRM 116 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 198 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 270 bp overlap
BRD4 3 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 91 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 88 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 462 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 85 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 153 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 233 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 303 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 257 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 389 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 468 bp overlap
CTCF 6 datasets
ChIP heart left ventricle ENCFF354HOQ 94 bp overlap
ChIP heart right ventricle ENCFF577TID 66 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 192 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 491 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 439 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 462 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF262VBH 256 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ChIP BLaER1 ENCFF460KDD 318 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 339 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 164 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 153 bp overlap
EP300 2 datasets
ChIP GM12878 ENCFF039QRE 56 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 185 bp overlap
ESR1 3 datasets
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 97 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 335 bp overlap
ChIP breast_tumor_Male_3 GSE104399.ESR1.breast_tumor_Male_3 430 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 132 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 169 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 523 bp overlap
ChIP DE DE-FOXA2-2 509 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 534 bp overlap
ChIP DE DE-GATA4-2 514 bp overlap
ChIP foregut GSE117136.GATA4.foregut 299 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 418 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 552 bp overlap
ChIP DE DE-GATA6-2 524 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 466 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 452 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 396 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 518 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 401 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 433 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 271 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCFF781IAU 205 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 116 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 269 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 319 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 120 bp overlap
ChIP HepG2 ENCFF854JLR 245 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 206 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 56 bp overlap
ChIP GM12878 ENCFF824TGK 68 bp overlap
IRF4 2 datasets
ChIP GM12878 ENCFF769ZDL 68 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 53 bp overlap
MAZ 1 dataset
ChIP GM12878 ENCFF453CES 76 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 122 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 67 bp overlap
MEF2D 4 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 311 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 271 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 298 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 358 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 147 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 217 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 181 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 76 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 210 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 106 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 141 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 202 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 261 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCFF340KVJ 167 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 98 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 69 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 324 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 463 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 298 bp overlap
POLR2A 3 datasets
ChIP Panc1 ENCFF290KAB 104 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 87 bp overlap
ChIP heart left ventricle ENCFF591JWH 50 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP lymphoblast GSE155324.RAD21.lymphoblast 119 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 264 bp overlap
RBPJ 2 datasets
ChIP LCL GSE75503.RBPJ.LCL 55 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 132 bp overlap
RCOR1 1 dataset
ChIP GM12878 ENCFF982CRX 54 bp overlap
RELA 1 dataset
ChIP K-562 ENCSR772EEN.RELA.K-562 136 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 193 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 214 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 445 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCFF171OVM 129 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 449 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 284 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 175 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 231 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 300 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 181 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 102 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 267 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 315 bp overlap
SP4 4 datasets
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 4 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 161 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 110 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 223 bp overlap
Spi1 2 datasets
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAF1 1 dataset
ChIP Ishikawa ENCFF271ZVL 58 bp overlap
TARDBP 2 datasets
ChIP GM12878 ENCFF866POT 141 bp overlap
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 211 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 121 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 110 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 232 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 593 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 82 bp overlap
ZNF140 2 datasets
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF217 1 dataset
ChIP GM12878 ENCFF978IGL 78 bp overlap
ZNF263 7 datasets
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ChIP HEK293 ENCFF336CWQ 430 bp overlap
ChIP HEK293 ENCFF336CWQ 591 bp overlap
ChIP K562 ENCFF640RNA 349 bp overlap
ZNF281 4 datasets
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF460 4 datasets
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 67 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 54 bp overlap
ZNF816 4 datasets
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
Motif DE_72h DE_72h-ZNF816_MA1719.2 15 bp overlap
Motif DE_72h DE_72h-ZNF816_MA1719.2 15 bp overlap