chr1 : 235,546,455 235,547,226
771 bp 80 TFs 5 linked genes
This 771 bp open chromatin element is linked to 5 target genes and is bound by 80 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
B3GALNT2 42.3 kb Distal Multiome
GNG4 103.0 kb Distal Multiome
TBCE 179.3 kb Distal Multiome
GGPS1 218.2 kb Distal Multiome
ARID4B 218.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:235,541,455 – 235,552,226
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 288 bp overlap
ARRB1 1 dataset
ChIP prostate GSE55615.ARRB1.prostate 169 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 275 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 173 bp overlap
BCL11A 2 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 88 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 54 bp overlap
BRD4 1 dataset
ChIP MCF-10A ERP003925.BRD4.MCF-10A 272 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 216 bp overlap
CREM 2 datasets
ChIP K-562 ENCSR077DKV.CREM.K-562 129 bp overlap
ChIP K562 ENCFF180STA 238 bp overlap
CTCF 81 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 258 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 257 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 524 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 717 bp overlap
ChIP CD14-positive monocyte ENCFF590KQU 363 bp overlap
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 146 bp overlap
ChIP GM12864 ENCFF357DQE 261 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 127 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 103 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 135 bp overlap
ChIP GM12873 ENCFF711LOS 258 bp overlap
ChIP GM23338 ENCFF531QOI 288 bp overlap
ChIP GM23338 ENCFF772DML 198 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 206 bp overlap
ChIP H1 ENCFF764RHO 248 bp overlap
ChIP H9 ENCFF152GTF 241 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 407 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 187 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 207 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 213 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 220 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 215 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 182 bp overlap
ChIP HL-60 ENCSR000DUP.CTCF.HL-60 125 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 95 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 173 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 161 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 117 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 118 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 126 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 119 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 135 bp overlap
ChIP K562 ENCFF400DFR 222 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 125 bp overlap
ChIP NB4 ENCFF155DNY 240 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 188 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 148 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 239 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 417 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 354 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 523 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 455 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 248 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 226 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 304 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 214 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 557 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 411 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 262 bp overlap
ChIP THP-1_eGFP-IFNb-r1 GSE103477.CTCF.THP-1_eGFP-IFNb-r1 147 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 517 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 210 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 249 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 342 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 264 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 270 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 193 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 209 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 272 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 116 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 95 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 128 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 241 bp overlap
ChIP endodermal cell ENCFF471YCZ 245 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 400 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 337 bp overlap
ChIP heart right ventricle ENCFF767XJQ 332 bp overlap
ChIP hepatocyte ENCFF263BLJ 241 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 131 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 251 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 155 bp overlap
ChIP neural progenitor cell ENCFF420RBO 151 bp overlap
ChIP neural progenitor cell ENCFF581WPG 445 bp overlap
ChIP neutrophil ENCFF770HHA 307 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 353 bp overlap
ChIP spleen ENCFF326DUY 288 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 188 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 205 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 367 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 242 bp overlap
FOSL2 1 dataset
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 212 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 659 bp overlap
ChIP DE DE-FOXA2-2 574 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
GATA1 1 dataset
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 596 bp overlap
ChIP DE DE-GATA4-2 613 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 491 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 265 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 711 bp overlap
ChIP DE DE-GATA6-2 689 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 307 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 563 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 382 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 274 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 241 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 314 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 621 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 316 bp overlap
MAF 2 datasets
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MEIS1 2 datasets
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
ChIP K562 ENCFF320GSD 280 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 148 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 161 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 82 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 214 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 291 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 76 bp overlap
NR2C1 1 dataset
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nr2e1 1 dataset
Motif DE_72h DE_72h-Nr2e1_MA0676.1 9 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 379 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 331 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 141 bp overlap
PKNOX1 3 datasets
ChIP GM12878 ENCFF589FCY 166 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 189 bp overlap
ChIP K562 ENCFF236IUS 195 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RAD21 2 datasets
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 235 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 217 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 213 bp overlap
RFX1 6 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 210 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 274 bp overlap
ChIP K562 ENCFF421AVO 253 bp overlap
ChIP K562 ENCFF809XVG 226 bp overlap
ChIP MCF-7 ENCFF782EZS 243 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 204 bp overlap
RUNX1 1 dataset
ChIP SKH1 GSE87283.RUNX1.SKH1 134 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 126 bp overlap
Rfx6 1 dataset
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 189 bp overlap
SFMBT1 1 dataset
ChIP HeLa GSE45441.SFMBT1.HeLa 128 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 182 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 474 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 167 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 290 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 405 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SRF 12 datasets
ChIP GM12878 ENCFF565AWY 165 bp overlap
ChIP GM12878 ENCFF878IIX 209 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 216 bp overlap
ChIP GM12878 ENCSR000BGE.SRF.GM12878 129 bp overlap
ChIP GM12878 ENCSR000BMI.SRF.GM12878 134 bp overlap
ChIP H1 ENCFF036PEF 158 bp overlap
ChIP Ishikawa ENCFF992QXM 161 bp overlap
ChIP K-562 ENCSR000BLK.SRF.K-562 137 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 142 bp overlap
ChIP K562 ENCFF766EOO 159 bp overlap
ChIP K562 ENCFF972RAQ 136 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 130 bp overlap
STAG2 2 datasets
ChIP HL-60 GSE131577.STAG2.HL-60 117 bp overlap
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 160 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 413 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 281 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 235 bp overlap
VEZF1 1 dataset
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 204 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 326 bp overlap
ZFP14 1 dataset
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 213 bp overlap
ChIP HEK293 ENCFF033NQQ 350 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF16 1 dataset
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF528 1 dataset
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
ZNF549 1 dataset
ChIP HEK293 ENCFF528IUI 288 bp overlap
ZNF669 1 dataset
Motif DE_72h DE_72h-ZNF669_MA1985.1 15 bp overlap
ZNF768 1 dataset
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
ZNF93 1 dataset
Motif DE_72h DE_72h-ZNF93_MA1721.2 14 bp overlap
Zic3 1 dataset
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap