chr15 : 46,079,957 46,080,404
447 bp 91 TFs 0 linked genes
This 447 bp open chromatin element has no linked target genes and is bound by 91 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:46,074,957 – 46,085,404
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 205 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 198 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 423 bp overlap
BACH2 1 dataset
ChIP SK-N-SH ENCFF518OYX 191 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 192 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 232 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 283 bp overlap
BRD2 1 dataset
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 237 bp overlap
BRD4 11 datasets
ChIP BE2C GSE80151.BRD4.BE2C 447 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 447 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 379 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 447 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 383 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 311 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 447 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 447 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 303 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 324 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 350 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 196 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 346 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 280 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 275 bp overlap
CTCF 13 datasets
ChIP BE2C ENCFF757SRF 259 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 206 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 189 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 112 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 164 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 175 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 192 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 198 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 177 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 283 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 123 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 239 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 216 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 156 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 447 bp overlap
ESRRG 2 datasets
ChIP SK-N-SH ENCFF394HLU 261 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 397 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 327 bp overlap
FLI1 5 datasets
ChIP A-673 GSE99959.FLI1.A-673 447 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 447 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 428 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 410 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 447 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 219 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
FOXP2 2 datasets
ChIP PFSK-1 ENCFF349WGE 300 bp overlap
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 151 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 310 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 440 bp overlap
ChIP SK-N-SH ENCFF764OZD 298 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 392 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 211 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 223 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 212 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 253 bp overlap
ChIP SK-N-SH ENCFF040SSB 305 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 144 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 447 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 123 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 447 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 420 bp overlap
ChIP SK-N-SH ENCFF285GEQ 227 bp overlap
JUN 2 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 220 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 184 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 305 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 423 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 447 bp overlap
MAX 2 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 199 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 180 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MED1 1 dataset
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 134 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 319 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 365 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 366 bp overlap
MYC 3 datasets
ChIP Kelly GSE138295.MYC.Kelly 431 bp overlap
ChIP NB69 GSE138295.MYC.NB69 416 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 248 bp overlap
MYCN 14 datasets
ChIP BE2C GSE80151.MYCN.BE2C 372 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 447 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 447 bp overlap
ChIP IMR-5_CD532 GSE78957.MYCN.IMR-5_CD532 99 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 431 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 143 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 345 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 318 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 447 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 447 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 401 bp overlap
ChIP NGP GSE80151.MYCN.NGP 360 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 393 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 372 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 175 bp overlap
ONECUT1 2 datasets
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 272 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 266 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 286 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 348 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 447 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 447 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 447 bp overlap
POLR2A 1 dataset
ChIP PFSK-1 ENCFF576NIT 447 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 158 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
RAD21 4 datasets
ChIP IMR-5 GSE78957.RAD21.IMR-5 226 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 416 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 447 bp overlap
RARA 3 datasets
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 296 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 251 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 447 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 131 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 447 bp overlap
REST 4 datasets
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 246 bp overlap
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
SIN3A 2 datasets
ChIP PFSK-1 ENCFF218MAY 291 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 138 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 427 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 394 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 391 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 308 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 147 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 345 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 258 bp overlap
SMARCA4 13 datasets
ChIP NGP GSE134626.SMARCA4.NGP 447 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 405 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 406 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 447 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 447 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 275 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 205 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 218 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 284 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 323 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 447 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 157 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 247 bp overlap
SMARCC1 4 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 248 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 222 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 251 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 209 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 210 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 447 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 386 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 206 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 154 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 385 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 416 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 447 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 447 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 244 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 353 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 275 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 280 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 340 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 447 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 422 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 422 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 148 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 292 bp overlap
ZFP3 3 datasets
ChIP SK-N-SH ENCFF981MBE 321 bp overlap
ChIP SK-N-SH ENCFF981MBE 87 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 428 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 317 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 303 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap