chr1 : 231,941,835 231,942,383
548 bp 87 TFs 1 linked gene
This 548 bp open chromatin element is linked to ENSG00000235152 and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000235152 218.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:231,936,835 – 231,947,383
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 4 datasets
ChIP DU145 GSE47987.AR.DU145 142 bp overlap
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 179 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.AR.prostate-cancer_PDX_141 92 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 159 bp overlap
ARNT::HIF1A 3 datasets
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_72h DE_72h-ARNTHIF1A_MA0259.2 5 bp overlap
BCL11A 1 dataset
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 91 bp overlap
BRD4 2 datasets
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 548 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 263 bp overlap
CTCF 6 datasets
ChIP HEK293 ENCFF821TIC 297 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 242 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 164 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 194 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 403 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 282 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 97 bp overlap
E2F6 3 datasets
Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap
Motif DE_48h DE_48h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 252 bp overlap
E2F8 2 datasets
Motif DE_36h DE_36h-E2F8_MA0865.3 9 bp overlap
Motif DE_48h DE_48h-E2F8_MA0865.3 9 bp overlap
EOMES 4 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 316 bp overlap
ESR1 5 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 177 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 196 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 162 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 265 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 250 bp overlap
ESR2 1 dataset
Motif DE_36h DE_36h-ESR2_MA0258.2 15 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 217 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 152 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 426 bp overlap
ChIP DE DE-FOXA2-2 333 bp overlap
FOXO1::FLI1 4 datasets
Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 148 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 227 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 135 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 461 bp overlap
ChIP DE DE-GATA4-2 442 bp overlap
ChIP foregut GSE117136.GATA4.foregut 385 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 435 bp overlap
ChIP DE DE-GATA6-2 451 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 466 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 548 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 499 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 533 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 517 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 547 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 382 bp overlap
ChIP foregut GSE117136.GATA6.foregut 400 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 365 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 548 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 548 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 397 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 405 bp overlap
GRHL2 8 datasets
ChIP LNCaP GSE80256.GRHL2.LNCaP 208 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 253 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 171 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 227 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 291 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 156 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 136 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 347 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 243 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 245 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 243 bp overlap
Hand1::Tcf3 5 datasets
Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_48h DE_48h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_48h DE_48h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_72h DE_72h-Hand1Tcf3_MA0092.2 9 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 308 bp overlap
JUN 6 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 326 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 377 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 277 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 364 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 259 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 326 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 198 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 239 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 416 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 337 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 226 bp overlap
MGA 3 datasets
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 300 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 186 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 311 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 299 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 233 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 289 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 240 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 320 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 296 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 285 bp overlap
NFIB 2 datasets
ChIP MCF-7 ENCFF799WGQ 309 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 309 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 205 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 345 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 251 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 202 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 403 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 278 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 271 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 435 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 299 bp overlap
PPARG 1 dataset
Motif DE_36h DE_36h-PPARG_MA0066.2 19 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 218 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 201 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 236 bp overlap
SMAD2 9 datasets
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 323 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 151 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 548 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 548 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 548 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 499 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 518 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 487 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 548 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 548 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 203 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 249 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 297 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 392 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 162 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
STAT3 16 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 372 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 342 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 485 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 450 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 241 bp overlap
ChIP MCF-7_jc5846 GSE126004.STAT3.MCF-7_jc5846 247 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 340 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 237 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 268 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 382 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 393 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 265 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 404 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 459 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 456 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 463 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX4 3 datasets
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 192 bp overlap
TFDP1 2 datasets
Motif DE_36h DE_36h-TFDP1_MA1122.2 8 bp overlap
Motif DE_48h DE_48h-TFDP1_MA1122.2 8 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 198 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 282 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 181 bp overlap
ZFP14 5 datasets
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 346 bp overlap
ChIP HEK293 ENCFF033NQQ 384 bp overlap
ZKSCAN5 4 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 192 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 434 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 468 bp overlap
ZNF320 1 dataset
ChIP HEK293 GSE76494.ZNF320.HEK293 157 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 286 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 323 bp overlap
ZNF418 1 dataset
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 88 bp overlap
ZNF549 2 datasets
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 309 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 253 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 188 bp overlap
ZNF675 1 dataset
Motif DE_48h DE_48h-ZNF675_MA1714.2 19 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCFF241QRH 233 bp overlap
Zic2 4 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap