chr13 : 99,818,120 99,818,590
470 bp 93 TFs 6 linked genes
This 470 bp open chromatin element is linked to 6 target genes and is bound by 93 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000286757 137.5 kb Distal Multiome
ZIC5 153.4 kb Distal Multiome
ZIC2 163.5 kb Distal Multiome
CLYBL 211.6 kb Distal Multiome
PCCA-DT 270.6 kb Distal Multiome
PCCA 270.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:99,813,120 – 99,823,590
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
BRD4 4 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 232 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 227 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 314 bp overlap
ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 218 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 205 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 148 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 310 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 410 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 190 bp overlap
ETS1 2 datasets
ChIP CD4-pos GSE146787.ETS1.CD4-pos 300 bp overlap
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 243 bp overlap
FLI1 3 datasets
ChIP A-673 GSE99959.FLI1.A-673 201 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 163 bp overlap
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 188 bp overlap
FOXA1 1 dataset
Motif DE_48h DE_48h-FOXA1_MA0148.5 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 470 bp overlap
ChIP DE DE-FOXA2-2 470 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_48h DE_48h-FOXD1_MA0031.2 7 bp overlap
FOXF2 1 dataset
Motif DE_48h DE_48h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_48h DE_48h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_48h DE_48h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_48h DE_48h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_48h DE_48h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_48h DE_48h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_48h DE_48h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_48h DE_48h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap
Foxl2 1 dataset
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_48h DE_48h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_48h DE_48h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 142 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 230 bp overlap
GATA3 1 dataset
ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 207 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 462 bp overlap
ChIP DE DE-GATA4-2 470 bp overlap
ChIP foregut GSE117136.GATA4.foregut 363 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 434 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 396 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 470 bp overlap
ChIP DE DE-GATA6-2 470 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 286 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 306 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 470 bp overlap
ChIP foregut GSE117136.GATA6.foregut 375 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 388 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HOXC11 1 dataset
Motif DE_48h DE_48h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 256 bp overlap
Irf1 2 datasets
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 296 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 278 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 163 bp overlap
MAZ 1 dataset
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MYB 4 datasets
ChIP CD4_TH2 GSE72266.MYB.CD4_TH2 191 bp overlap
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 285 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 229 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 182 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 135 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 347 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 287 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NME2 1 dataset
ChIP A-549_IND GSE40300.NME2.A-549_IND 65 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 280 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 300 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 285 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 66 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 105 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 182 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 75 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 310 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 211 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 401 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 249 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 246 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 204 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 185 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 470 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 183 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 223 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 245 bp overlap
SP8 1 dataset
Motif DE_48h DE_48h-SP8_MA0747.2 11 bp overlap
SPI1 3 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 161 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 180 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 159 bp overlap
STAT5B 1 dataset
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 257 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 224 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 187 bp overlap
TBX21 2 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 213 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 227 bp overlap
ZBTB1 1 dataset
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 121 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 142 bp overlap
ZNF148 1 dataset
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
ZNF282 2 datasets
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
ZNF317 1 dataset
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 181 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 52 bp overlap
ZNF418 2 datasets
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 300 bp overlap
ZNF768 2 datasets
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
ZNF85 1 dataset
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 375 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 219 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 281 bp overlap