chr13 : 93,561,567 93,562,051
484 bp 108 TFs 0 linked genes
This 484 bp open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:93,556,567 – 93,567,051
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1 GSE85558.AR.22Rv1 223 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 162 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 484 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 484 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 484 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 484 bp overlap
Alx1 1 dataset
Motif ES_0h ES_0h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 484 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 484 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 115 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 207 bp overlap
BRD4 7 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 367 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 436 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 306 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 377 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 88 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 484 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 444 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 265 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
DMRTC2 1 dataset
Motif ES_0h ES_0h-DMRTC2_MA1479.2 11 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 195 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 275 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 484 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 443 bp overlap
ChIP DE DE-FOXA2-2 439 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 247 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 478 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 428 bp overlap
ChIP DE DE-GATA6-2 295 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 415 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 432 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 426 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 360 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 462 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 275 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
Gli2 1 dataset
Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 142 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HNF4A 6 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 364 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 146 bp overlap
ChIP HepG2 ENCFF146SSF 336 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 155 bp overlap
ChIP liver ENCFF449HPV 420 bp overlap
ChIP liver ERP002306.HNF4A.liver 161 bp overlap
HNF4G 2 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 221 bp overlap
ChIP HepG2 ENCFF323ATZ 291 bp overlap
HOMEZ 1 dataset
ChIP HepG2 ENCFF800ZQH 411 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 484 bp overlap
Isl1 1 dataset
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 484 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
MAFK 1 dataset
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 484 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 409 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 139 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 404 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 287 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 283 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 213 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 351 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 446 bp overlap
Mafg 1 dataset
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 231 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 182 bp overlap
ChIP H1 ENCFF747ZPQ 195 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 484 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 484 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 187 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 484 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 293 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 215 bp overlap
ChIP hESC GSE18292.NANOG.hESC 181 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 362 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 145 bp overlap
ChIP NCI-H524 GSE69394.NEUROD1.NCI-H524 153 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 349 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 266 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 362 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 217 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 376 bp overlap
Nfe2l2 1 dataset
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 308 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 224 bp overlap
PHOX2B 1 dataset
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 281 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 389 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 484 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 484 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 98 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RELB 1 dataset
Motif ES_0h ES_0h-RELB_MA1117.2 7 bp overlap
RFX7 1 dataset
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 368 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 148 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 198 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 65 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 484 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 484 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 474 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 443 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 343 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 484 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 133 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 257 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 242 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 477 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 484 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 273 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 448 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 230 bp overlap
ChIP hESC GSE18292.SOX2.hESC 169 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 346 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 156 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
YY1 7 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 320 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 367 bp overlap
ChIP liver ENCFF400MBC 484 bp overlap
ChIP liver ENCFF515BWJ 484 bp overlap
ChIP liver ENCFF515BWJ 340 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 182 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 144 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 311 bp overlap