chr1 : 220,274,229 220,274,377
148 bp 83 TFs 2 linked genes
This 148 bp open chromatin element is linked to RAB3GAP2 and AURKAP1 and is bound by 83 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RAB3GAP2 1.8 kb Proximal Proximity
AURKAP1 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:220,269,229 – 220,279,377
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 133 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 148 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 82 bp overlap
ChIP K562 ENCFF308SKS 72 bp overlap
Ascl2 1 dataset
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BRD2 1 dataset
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 111 bp overlap
BRD3 1 dataset
ChIP THP-1_DMSO GSE138084.BRD3.THP-1_DMSO 91 bp overlap
BRD4 7 datasets
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 148 bp overlap
ChIP K562 ENCFF092PWQ 148 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 105 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 87 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 136 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 148 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 57 bp overlap
CEBPA 3 datasets
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 77 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 50 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 106 bp overlap
CEBPB 4 datasets
ChIP HCT116 ENCFF097OLY 63 bp overlap
ChIP K562 ENCFF584CTB 80 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 80 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 61 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 148 bp overlap
ChIP K562 ENCFF956TPS 71 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 148 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 148 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 69 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 73 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 148 bp overlap
ChIP K562 ENCFF688PUB 148 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 73 bp overlap
EGR1 1 dataset
ChIP HCT116 ENCFF456NPQ 89 bp overlap
FOXO4 1 dataset
ChIP K562 ENCFF296NLF 99 bp overlap
HBP1 1 dataset
ChIP K562 ENCFF882TEV 64 bp overlap
HNF4A 2 datasets
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 148 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 55 bp overlap
KMT2B 1 dataset
ChIP AML GSE112074.KMT2B.AML 148 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 122 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF982GSZ 148 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 53 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 148 bp overlap
MYF6 1 dataset
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 148 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 138 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 148 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 148 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 148 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 148 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 148 bp overlap
ChIP hESC GSE18292.NANOG.hESC 136 bp overlap
NFIX 1 dataset
ChIP K562 ENCFF382SJS 58 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 148 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 148 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
POLR2A 1 dataset
ChIP breast epithelium ENCFF045XXN 148 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 148 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 112 bp overlap
RBPJ 3 datasets
ChIP GIC GSE79734.RBPJ.GIC 80 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 83 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 148 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 89 bp overlap
SHOX2 1 dataset
ChIP K-562 ENCSR184IQF.SHOX2.K-562 148 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 148 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 148 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 148 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 148 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 134 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 148 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 125 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 148 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 148 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 148 bp overlap
ChIP hESC GSE69479.SOX2.hESC 148 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 148 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SPI1 1 dataset
ChIP U-937 GSE128834.SPI1.U-937 73 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
Tcf21 1 dataset
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 114 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 69 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF148 1 dataset
ChIP K562 ENCFF352SDL 113 bp overlap
ZNF175 2 datasets
ChIP K-562 ENCSR011PEI.ZNF175.K-562 129 bp overlap
ChIP K562 ENCFF497AEJ 148 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR117WTM.ZNF24.K-562 148 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 79 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 52 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 148 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 134 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 148 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 104 bp overlap
ZNF644 1 dataset
ChIP K562 ENCFF290PDB 148 bp overlap
ZNF79 1 dataset
ChIP K562 ENCFF558WWN 74 bp overlap