chr12 : 79,217,247 79,217,646
399 bp 108 TFs 0 linked genes
This 399 bp open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:79,212,247 – 79,222,646
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 156 bp overlap
ASCL1 4 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 109 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 193 bp overlap
Arid5a 1 dataset
Motif DE_12h DE_12h-Arid5a_MA0602.2 8 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BRD4 1 dataset
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 333 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 392 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 171 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 151 bp overlap
CTNNB1 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 272 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 287 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 271 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 140 bp overlap
ESR1 3 datasets
ChIP MCF-7 GSE68356.ESR1.MCF-7 272 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 245 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 195 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 2 datasets
ChIP LS180 GSE140533.FOXA1.LS180 268 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 205 bp overlap
FOXA2 2 datasets
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
ChIP colorectal-cancer_type-C GSE106921.FOXA2.colorectal-cancer_type-C 290 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 303 bp overlap
HLF 1 dataset
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 345 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 135 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 188 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 279 bp overlap
MYBL2 1 dataset
Motif DE_12h DE_12h-MYBL2_MA0777.1 15 bp overlap
MYC 1 dataset
ChIP CUTLL1 GSE90716.MYC.CUTLL1 188 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
NANOG 2 datasets
ChIP WA09 GSE105028.NANOG.WA09 230 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 214 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 189 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 268 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 145 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 167 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 4 datasets
ChIP LK2 GSE137459.SOX2.LK2 347 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 380 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 399 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 395 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 61 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 357 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 233 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 255 bp overlap
YY1 4 datasets
ChIP ALL GSE145549.YY1.ALL 394 bp overlap
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 295 bp overlap
ChIP WA01 GSE39096.YY1.WA01 176 bp overlap
Yy1 2 datasets
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBED1 1 dataset
Motif DE_12h DE_12h-ZBED1_MA0749.2 12 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 193 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF354A 2 datasets
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap