chr12 : 45,986,865 45,987,268
403 bp 78 TFs 2 linked genes
This 403 bp open chromatin element is linked to SCAF11 and ENSG00000289046 and is bound by 78 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SCAF11 3.3 kb Proximal Proximity
ENSG00000289046 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:45,981,865 – 45,992,268
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 403 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 361 bp overlap
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 117 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 314 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 221 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCFF521LQJ 243 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCFF037PYH 177 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 147 bp overlap
BRD4 4 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 137 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 323 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 394 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 285 bp overlap
CHD1 1 dataset
ChIP GM12878 ENCFF566UBH 133 bp overlap
CREB1 2 datasets
ChIP GM12878 ENCFF870CVH 139 bp overlap
ChIP GM12878 ENCFF870CVH 351 bp overlap
CREBBP 3 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 206 bp overlap
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 133 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 223 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCFF681AJV 205 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCFF692SMY 173 bp overlap
EOMES 1 dataset
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 163 bp overlap
ESR1 1 dataset
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 71 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 403 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 328 bp overlap
ChIP DE DE-FOXA2-2 370 bp overlap
FOXL2 1 dataset
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 100 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 58 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF352QVM 59 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 56 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 312 bp overlap
ChIP DE DE-GATA4-2 268 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 305 bp overlap
ChIP DE DE-GATA6-2 317 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 200 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 299 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 93 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 149 bp overlap
ChIP GM12878 ENCFF753XDO 403 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 207 bp overlap
ChIP GM12878 ENCFF238LYK 403 bp overlap
ChIP GM12878 ENCFF918AID 287 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 163 bp overlap
JMJD1C 2 datasets
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 96 bp overlap
ChIP NB4 GSE63484.JMJD1C.NB4 60 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 304 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 284 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 340 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 226 bp overlap
KMT2A 2 datasets
ChIP MV4-11 GSE83671.KMT2A.MV4-11 207 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 250 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 142 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 54 bp overlap
MAX 2 datasets
ChIP NB4 ENCFF966MWB 85 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 116 bp overlap
MED1 2 datasets
ChIP G296S GSE85628.MED1.G296S 288 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 288 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 253 bp overlap
MEN1 1 dataset
ChIP MCF-7 GSE85317.MEN1.MCF-7 74 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 403 bp overlap
MXI1 1 dataset
ChIP GM12878 ENCFF666NJR 222 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 86 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 127 bp overlap
MYC 2 datasets
ChIP NB4 ENCFF142PRP 113 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 113 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 230 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCFF340KVJ 250 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 167 bp overlap
NR5A2 1 dataset
ChIP A549 ENCFF834RVE 403 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 92 bp overlap
PKNOX2 1 dataset
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 4 datasets
ChIP HL-60 ENCFF321XKE 176 bp overlap
ChIP HeLa-S3 ENCFF773DNG 401 bp overlap
ChIP Raji ENCFF613VGX 248 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 175 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 371 bp overlap
ChIP HEK293 ENCFF145WQQ 364 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCFF069PHD 385 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 80 bp overlap
RELB 3 datasets
ChIP GM12878 ENCFF217ADF 201 bp overlap
ChIP GM12878 ENCFF217ADF 403 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 235 bp overlap
RUNX1 1 dataset
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 119 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 101 bp overlap
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 119 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 143 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 234 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 258 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 256 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 125 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 117 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 73 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 209 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 337 bp overlap
SPI1 6 datasets
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 140 bp overlap
ChIP GM12878 ENCFF134LCP 108 bp overlap
ChIP GM12891 ENCFF563IUT 82 bp overlap
ChIP HL-60 ENCFF645GBT 88 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 63 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 111 bp overlap
SREBF1 1 dataset
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 214 bp overlap
TBP 1 dataset
ChIP GM12878 ENCFF571OXR 144 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCFF951HUW 131 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 338 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 180 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 121 bp overlap
TEAD1 2 datasets
ChIP MSTO GSE68170.TEAD1.MSTO 227 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 316 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 239 bp overlap
TFAP4 1 dataset
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 186 bp overlap
TGIF1 1 dataset
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_60h DE_60h-TGIF2LX_MA1571.1 12 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCFF919OMX 107 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 297 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 207 bp overlap
ZNF213 1 dataset
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZSCAN5A 1 dataset
ChIP HepG2 ENCFF633DFI 216 bp overlap