chr12 : 10,205,393 10,205,841
448 bp 73 TFs 1 linked gene
This 448 bp open chromatin element is linked to GABARAPL1 and is bound by 73 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GABARAPL1 7.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:10,200,393 – 10,210,841
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AFF4 4 datasets
ChIP HeLa GSE40632.AFF4.HeLa 218 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 299 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 375 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 283 bp overlap
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 288 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 100 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 185 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 218 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 205 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 189 bp overlap
BRD4 9 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 112 bp overlap
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 250 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 164 bp overlap
ChIP HCC1806_300nMJQ1_24h GSE87418.BRD4.HCC1806_300nMJQ1_24h 227 bp overlap
ChIP HCC1806_DMSO_24h GSE87418.BRD4.HCC1806_DMSO_24h 149 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 208 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 267 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 251 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 352 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 207 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 216 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 141 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 215 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 166 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 197 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 136 bp overlap
ELL2 3 datasets
ChIP HeLa GSE40632.ELL2.HeLa 206 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 123 bp overlap
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 417 bp overlap
EP300 4 datasets
ChIP HeLa-S3 ENCFF089VPQ 67 bp overlap
ChIP HeLa-S3 ENCFF245KNK 90 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 75 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 111 bp overlap
ESR1 2 datasets
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 279 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 194 bp overlap
ESRRA 2 datasets
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 205 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 221 bp overlap
EZH2 1 dataset
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 137 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 120 bp overlap
FOSL2 4 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 228 bp overlap
ChIP A549 ENCFF195CES 172 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 51 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 100 bp overlap
FOXA2 7 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 169 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 147 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 131 bp overlap
ChIP DE DE-FOXA2-1 325 bp overlap
ChIP DE DE-FOXA2-2 254 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 120 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 182 bp overlap
FOXL2 5 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 340 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 308 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 362 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 324 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 391 bp overlap
GATA2 4 datasets
ChIP ESF GSE108408.GATA2.ESF 224 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 65 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 219 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 74 bp overlap
GATA3 1 dataset
ChIP A549 ENCFF226FVV 199 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 221 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 78 bp overlap
ChIP DE DE-GATA4-1 206 bp overlap
ChIP DE DE-GATA4-1 93 bp overlap
ChIP DE DE-GATA4-2 250 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 95 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 248 bp overlap
ChIP DE DE-GATA6-1 134 bp overlap
ChIP DE DE-GATA6-2 448 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 447 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 448 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 263 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 80 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 448 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 448 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 383 bp overlap
HIF1A 2 datasets
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 135 bp overlap
ChIP PC-3_siOC2 GSE106305.HIF1A.PC-3_siOC2 118 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 344 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 298 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 320 bp overlap
ChIP HeLa-S3 ENCFF668QVP 68 bp overlap
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 131 bp overlap
JUNB 1 dataset
ChIP keratinocyte_CTR GSE139685.JUNB.keratinocyte_CTR 104 bp overlap
JUND 2 datasets
ChIP HeLa-S3 ENCFF642OHL 99 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 136 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 202 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 351 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 100 bp overlap
MAFK 1 dataset
ChIP HeLa-S3 ENCFF304XGR 183 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 95 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 147 bp overlap
MED26 2 datasets
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 169 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 219 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 145 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 141 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 234 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 215 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 180 bp overlap
NIPBL 2 datasets
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 442 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 174 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 244 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BHG.NR3C1.A-549 217 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 62 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 120 bp overlap
POU2F1 1 dataset
ChIP IMR-90_TERT GSE38303.POU2F1.IMR-90_TERT 169 bp overlap
POU5F1 8 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 448 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 205 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 448 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 138 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 448 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 271 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 203 bp overlap
RAD21 1 dataset
ChIP HeLa-S3 ENCFF775CHI 231 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 146 bp overlap
RCOR1 1 dataset
ChIP HeLa-S3 ENCFF471KYI 87 bp overlap
RELA 6 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 269 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 192 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 162 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 57 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 305 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 380 bp overlap
RFX1 2 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 272 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 298 bp overlap
RFX5 1 dataset
ChIP HeLa-S3 ENCFF703XPB 174 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 163 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 205 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 66 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 228 bp overlap
SMARCA4 12 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 110 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 285 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 360 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 171 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 110 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 161 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 90 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 66 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 145 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 422 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 124 bp overlap
SMARCB1 3 datasets
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 222 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 448 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 277 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 238 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 111 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 176 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 85 bp overlap
SNAI2 2 datasets
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 244 bp overlap
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 448 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 246 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 293 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_6aa GSE139053.SS18-SSX.fibroblast_6aa 114 bp overlap
ChIP fibroblast_L169A GSE139053.SS18-SSX.fibroblast_L169A 127 bp overlap
STAT1 1 dataset
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 250 bp overlap
STAT3 2 datasets
ChIP HeLa-S3 ENCFF655DGU 115 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 91 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 213 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 124 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 117 bp overlap
TCF7L2 2 datasets
ChIP HeLa-S3 ENCFF084KRL 104 bp overlap
ChIP HeLa-S3 ENCFF673QAB 126 bp overlap
TEAD1 2 datasets
ChIP H69 GSE62274.TEAD1.H69 184 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 269 bp overlap
TEAD4 5 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 407 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 430 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 370 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 436 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 311 bp overlap
TP53 3 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 168 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 410 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 131 bp overlap
USF2 1 dataset
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 139 bp overlap
YY1AP1 4 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 447 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 350 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 448 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 416 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 117 bp overlap