chr1 : 182,957,895 182,958,423
528 bp 75 TFs 5 linked genes
This 528 bp open chromatin element is linked to 5 target genes and is bound by 75 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
DHX9-AS1 118.5 kb Distal Multiome
DHX9 118.7 kb Distal Multiome
NPL 168.3 kb Distal Multiome
LAMC1 176.6 kb Distal Multiome
LAMC2 228.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:182,952,895 – 182,963,423
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 247 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 287 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 331 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 198 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 203 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 114 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 245 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 307 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 122 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 456 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 235 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 526 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 195 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 212 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 270 bp overlap
ChIP hESC GSE17917.EP300.hESC 325 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 345 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 232 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 324 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 358 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 370 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 148 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 381 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 288 bp overlap
MAFK 3 datasets
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 296 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 421 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 328 bp overlap
Mafg 1 dataset
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 153 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 296 bp overlap
ChIP H1 ENCFF747ZPQ 124 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 528 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 364 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 328 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 528 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 393 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 365 bp overlap
ChIP hESC GSE20650.NANOG.hESC 228 bp overlap
ChIP hESC GSE18292.NANOG.hESC 208 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 132 bp overlap
ChIP K562 ENCFF163BSI 265 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 194 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 189 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 192 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 218 bp overlap
Nfe2l2 1 dataset
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
POU5F1 17 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 381 bp overlap
ChIP GM23338 ENCFF333SNB 305 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 435 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 400 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 528 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 282 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 295 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 313 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 320 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 272 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 403 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 466 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 290 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 232 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 233 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 259 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
REST 2 datasets
ChIP GM23338 ENCFF024TCL 265 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 158 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 284 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 107 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 235 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 233 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 307 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 199 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 309 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 335 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 322 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 323 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 329 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 340 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 181 bp overlap
ChIP hESC GSE69479.SOX2.hESC 256 bp overlap
ChIP hESC GSE18292.SOX2.hESC 200 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 327 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 303 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 133 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 158 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 218 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 246 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 338 bp overlap
TEAD4 4 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 164 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 395 bp overlap
ChIP H1 ENCFF778PAX 113 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 292 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 245 bp overlap
TRIM28 3 datasets
ChIP WA01 GSE78099.TRIM28.WA01 86 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 216 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 243 bp overlap
Thap11 1 dataset
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 193 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 283 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF219 1 dataset
ChIP WTC11 ENCFF998WKU 397 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 268 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 222 bp overlap
ZNF652 1 dataset
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
Zic2 1 dataset
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap